CF834190

Overview
NameCF834190
Unique NameCF834190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.542e-49
Identity = 87/124 (70.16%), Postives = 103/124 (83.06%), Query Frame = -2
Query:  240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611
            RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ +L+R GW+PCLEFEL KG+V+ EH+KSP Y DGRYWTMWKLPM+G TD  QV+KEV EV   YP +FVR+IGF+N RQVQCISFIA  P
Sbjct:   10 RVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 4.626e-49
Identity = 87/126 (69.05%), Postives = 105/126 (83.33%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RVQCM+VWPP G KKFETLSYLP L+   L KE+++L+RS WIPCLEFELE+G+V R++   P Y DGRYWTMWKLPM+GCTD+ QVL+E+   +KEYP++F+RIIGFDN RQVQCISFIA KP G
Sbjct:   56 RVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKPKG 181          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.645e-46
Identity = 83/126 (65.87%), Postives = 103/126 (81.75%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            R++CM+VWP  G KKFETLSYLPPLS + LLK++++L+R+GWIPCLEF  + G+V+RE+  SP Y DGRYWTMWKLPM+GC DATQV KE+ E  K YP +F R+IGFDN +Q QC+SFIA KPPG
Sbjct:   44 RIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.645e-46
Identity = 85/122 (69.67%), Postives = 101/122 (82.79%), Query Frame = -2
Query:  234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599
            M+VWPP GLKKFETLSYLPPL+ E LL E+N+L+  GWIP LEFE++ G+V+REH KSPGY DGRYWTMWKLPM+G TD  QV+ EV EV+K  P +FVR IGF++KR+VQCISFIA KP G
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.066e-45
Identity = 80/124 (64.52%), Postives = 103/124 (83.06%), Query Frame = -2
Query:  240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611
            RV+CM+VWPP G  KFETLSYLP L++E L+KE+ +L+R+ W+PCLEF+LE G + R++++SPGY DGRYW MWKLPM+GCT+A+QV+ EV E  K YP +F+R+IGFDN RQVQCISFI  KP
Sbjct:   48 RVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.627e-44
Identity = 80/124 (64.52%), Postives = 99/124 (79.84%), Query Frame = -2
Query:  240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611
            RV+CM+VWPP   KKFETLSYLP L+ E L+KE+ +L+++ W+PCLEFE E G + R +  SPGY DGRYW MWKLPM+GCT+A+QVL EV E  K YP++F+R+IGFDN RQVQCISFI  KP
Sbjct:   64 RVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.480e-44
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = -2
Query:  234 SYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 554
            +YLPPLS EALLK++++LIRS W+PCLEF  + G++FREH+ SPGY DGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.349e-40
Identity = 77/126 (61.11%), Postives = 97/126 (76.98%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            R++CM+VWP  G KKFETLSYLPPL+ E LLK++++L+R+ W+PCLEF  E G+V+RE+  SP Y DGRYWTMWKLPM+GCTDA+QV KE+ E    YP     I+GFDN RQ Q ++FIA KP G
Sbjct:   43 RIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.339e-39
Identity = 74/125 (59.20%), Postives = 94/125 (75.20%), Query Frame = -2
Query:  240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISFIAAKP 611
            RV CM+VW P    KFETLSYLPPLS +AL K+I+++I+SGW PC+EF+++ G V RE    PGY DGRYWTMWKLPM+GCTD+  VL+E+ E +K Y    ++R +GFDN RQVQC SFI  +P
Sbjct:   55 RVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.306e-32
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = -2
Query:  234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 262          

HSP 2 Score: 138.658 bits (348), Expect = 2.306e-32
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = -2
Query:  234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 406          

HSP 3 Score: 138.658 bits (348), Expect = 2.306e-32
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = -2
Query:  234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 693          

HSP 4 Score: 138.658 bits (348), Expect = 2.306e-32
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = -2
Query:  234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 836          

HSP 5 Score: 138.658 bits (348), Expect = 2.306e-32
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = -2
Query:  234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 1124          

HSP 6 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = -2
Query:  234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GY D  YWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 549          

HSP 7 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 63/126 (50.00%), Postives = 85/126 (67.46%), Query Frame = -2
Query:  240 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 599
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P
Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1266          

HSP 8 Score: 134.42 bits (337), Expect = 4.350e-31
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = -2
Query:  234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR + FD+ +QVQ ISF+  +P G
Sbjct:  854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFVVQRPSG 980          
The following BLAST results are available for this feature:
BLAST of CF834190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS1_PEA3.542e-4970.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GOSHI4.626e-4969.05Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE1.645e-4665.87Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL1.645e-4669.67Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_PINTH1.066e-4564.52Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA2.627e-4464.52Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT4.480e-4473.83Ribulose bisphosphate carboxylase small chain clon... [more]
RBS_SACHY1.349e-4061.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MARPA4.339e-3959.20Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_EUGGR2.306e-3250.00Ribulose bisphosphate carboxylase small chains, ch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834190 ID=CF834190; Name=CF834190; organism=Citrus sinensis; type=EST; length=612bp
TTTTTTTTTTTTTTTTTAAAGGATTCAATTATTAAAATATATACCTTAAA
AAAAAAAAGAAGCCAAAGTCGGGGAGAAAACCAAACATGTTTGAGCAGCA
GCAACAGCAGCCTAAGTACAAATTAAACGCAAACCGAACCCCCATTGATC
GAATGATCATTATGGGGGTTACACATAATAATAATCAACAATATTGCATG
GGGGGTTACACAAATTTAATTGGGAACCTAAACGCCTGGGGGCTTGGCAG
CAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAAATCCGATAATT
CGGACGAATGAATGTGGGTATTCCTTCTGGACCTCCCCAACCTCCTTCAA
AACCTGGGTTGCATCTGTGCACCCATACATGGGCAGCTTCCACATTGTCC
AGTAGCGTCCATCGGAGTATCCTGGTGACTTGTGGTGCTCACGGAACACC
CATCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAGCCGGAGCGGAT
AAGGAAATTGATTTCCTTGAGCAAAGCTTCATCGGACAGTGGCGGGAGGT
ATGAAAGAGTCTCGAACTTCTTCAAGCCAGTTGGTGGCCACACCTTCATG
CATTGGACTCTT
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