CF834190
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 3.542e-49 Identity = 87/124 (70.16%), Postives = 103/124 (83.06%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ +L+R GW+PCLEFEL KG+V+ EH+KSP Y DGRYWTMWKLPM+G TD QV+KEV EV YP +FVR+IGF+N RQVQCISFIA P Sbjct: 10 RVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2) HSP 1 Score: 194.126 bits (492), Expect = 4.626e-49 Identity = 87/126 (69.05%), Postives = 105/126 (83.33%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 RVQCM+VWPP G KKFETLSYLP L+ L KE+++L+RS WIPCLEFELE+G+V R++ P Y DGRYWTMWKLPM+GCTD+ QVL+E+ +KEYP++F+RIIGFDN RQVQCISFIA KP G Sbjct: 56 RVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKPKG 181
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.645e-46 Identity = 83/126 (65.87%), Postives = 103/126 (81.75%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 R++CM+VWP G KKFETLSYLPPLS + LLK++++L+R+GWIPCLEF + G+V+RE+ SP Y DGRYWTMWKLPM+GC DATQV KE+ E K YP +F R+IGFDN +Q QC+SFIA KPPG Sbjct: 44 RIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.645e-46 Identity = 85/122 (69.67%), Postives = 101/122 (82.79%), Query Frame = -2 Query: 234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599 M+VWPP GLKKFETLSYLPPL+ E LL E+N+L+ GWIP LEFE++ G+V+REH KSPGY DGRYWTMWKLPM+G TD QV+ EV EV+K P +FVR IGF++KR+VQCISFIA KP G Sbjct: 1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.066e-45 Identity = 80/124 (64.52%), Postives = 103/124 (83.06%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 RV+CM+VWPP G KFETLSYLP L++E L+KE+ +L+R+ W+PCLEF+LE G + R++++SPGY DGRYW MWKLPM+GCT+A+QV+ EV E K YP +F+R+IGFDN RQVQCISFI KP Sbjct: 48 RVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 2.627e-44 Identity = 80/124 (64.52%), Postives = 99/124 (79.84%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 RV+CM+VWPP KKFETLSYLP L+ E L+KE+ +L+++ W+PCLEFE E G + R + SPGY DGRYW MWKLPM+GCT+A+QVL EV E K YP++F+R+IGFDN RQVQCISFI KP Sbjct: 64 RVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 4.480e-44 Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = -2 Query: 234 SYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 554 +YLPPLS EALLK++++LIRS W+PCLEF + G++FREH+ SPGY DGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG Sbjct: 1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.349e-40 Identity = 77/126 (61.11%), Postives = 97/126 (76.98%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 R++CM+VWP G KKFETLSYLPPL+ E LLK++++L+R+ W+PCLEF E G+V+RE+ SP Y DGRYWTMWKLPM+GCTDA+QV KE+ E YP I+GFDN RQ Q ++FIA KP G Sbjct: 43 RIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 4.339e-39 Identity = 74/125 (59.20%), Postives = 94/125 (75.20%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISFIAAKP 611 RV CM+VW P KFETLSYLPPLS +AL K+I+++I+SGW PC+EF+++ G V RE PGY DGRYWTMWKLPM+GCTD+ VL+E+ E +K Y ++R +GFDN RQVQC SFI +P Sbjct: 55 RVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.306e-32 Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = -2 Query: 234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 262 HSP 2 Score: 138.658 bits (348), Expect = 2.306e-32 Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = -2 Query: 234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 406 HSP 3 Score: 138.658 bits (348), Expect = 2.306e-32 Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = -2 Query: 234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 693 HSP 4 Score: 138.658 bits (348), Expect = 2.306e-32 Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = -2 Query: 234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 836 HSP 5 Score: 138.658 bits (348), Expect = 2.306e-32 Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = -2 Query: 234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 1124 HSP 6 Score: 136.732 bits (343), Expect = 8.764e-32 Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = -2 Query: 234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GY D YWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 549 HSP 7 Score: 136.732 bits (343), Expect = 8.764e-32 Identity = 63/126 (50.00%), Postives = 85/126 (67.46%), Query Frame = -2 Query: 240 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 599 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1266 HSP 8 Score: 134.42 bits (337), Expect = 4.350e-31 Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = -2 Query: 234 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHH-----KSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 599 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GY D RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR + FD+ +QVQ ISF+ +P G Sbjct: 854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFVVQRPSG 980 The following BLAST results are available for this feature:
BLAST of CF834190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834190 ID=CF834190; Name=CF834190; organism=Citrus sinensis; type=EST; length=612bpback to top |