CF834190

Overview
NameCF834190
Unique NameCF834190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.330e-31
Identity = 57/125 (45.60%), Postives = 84/125 (67.20%), Query Frame = -2
Query:  240 KVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFE------LEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 596
            KVW P   K++ET SYLPPL+++ + ++++++I +GW PCLEF       +      R    S GY D RYWTMWKLPM+GCTD +QVL+EV   Q  +P+ ++R++ FDN +QVQC+ F+  +P
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.350e-31
Identity = 61/126 (48.41%), Postives = 84/126 (66.67%), Query Frame = -2
Query:  240 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEF-ELEKGWVFREHHKSPG-----YSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 599
            M VW P   K FET SYLPPLSDE +  ++++++ +GWIPCLEF E +K +V  E     G     Y D RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.419e-31
Identity = 58/77 (75.32%), Postives = 68/77 (88.31%), Query Frame = -2
Query:  237 ELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 467
            ELE G+V+REH  +PGY DGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.419e-31
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = -2
Query:  240 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEF-ELEKGWVFREHHKSPG-----YSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 599
            M VW P   K FET SYLPPL+DE +  ++++++ +GWIPCLEF E +K +V  E     G     Y D RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.944e-29
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = -2
Query:  237 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHHKSPG-----YSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 599
            M VW P   K FET SYLPPL+DE + K++++++ + W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.069e-29
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = -2
Query:  237 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHHKSPG-----YSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 599
            M VW P   K FET SYLPPL+DE + K++++++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   45 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 171          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.069e-29
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = -2
Query:  237 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHHKSPG-----YSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 599
            M VW P   K FET SYLPPL+DE + K++++++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.069e-29
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = -2
Query:  237 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHHKSPG-----YSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 599
            M VW P   K FET SYLPPL+DE + K++++++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.547e-28
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = -2
Query:  237 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHHKSPG-----YSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 599
            M VW P   K FET S+LPPL+DE + K++++++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTDA+QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.639e-28
Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = -2
Query:  237 MKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFEL-EKGWVFREHHKSPG-----YSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 599
            M VW P   K FET SYLPPL+DE + K++++++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL ++    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170          
The following BLAST results are available for this feature:
BLAST of CF834190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS_CHLMO3.330e-3145.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_CHLRE4.350e-3148.41Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_SINAL7.419e-3175.32Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS1_CHLRE7.419e-3147.62Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS6_ACECL6.944e-2944.88Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_ACECL9.069e-2944.88Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACECL9.069e-2944.88Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_ACECL9.069e-2944.88Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3_ACEAT1.547e-2844.88Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS7_ACECL2.639e-2844.09Ribulose bisphosphate carboxylase small chain 7, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834190 ID=CF834190; Name=CF834190; organism=Citrus sinensis; type=EST; length=612bp
TTTTTTTTTTTTTTTTTAAAGGATTCAATTATTAAAATATATACCTTAAA
AAAAAAAAGAAGCCAAAGTCGGGGAGAAAACCAAACATGTTTGAGCAGCA
GCAACAGCAGCCTAAGTACAAATTAAACGCAAACCGAACCCCCATTGATC
GAATGATCATTATGGGGGTTACACATAATAATAATCAACAATATTGCATG
GGGGGTTACACAAATTTAATTGGGAACCTAAACGCCTGGGGGCTTGGCAG
CAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAAATCCGATAATT
CGGACGAATGAATGTGGGTATTCCTTCTGGACCTCCCCAACCTCCTTCAA
AACCTGGGTTGCATCTGTGCACCCATACATGGGCAGCTTCCACATTGTCC
AGTAGCGTCCATCGGAGTATCCTGGTGACTTGTGGTGCTCACGGAACACC
CATCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAGCCGGAGCGGAT
AAGGAAATTGATTTCCTTGAGCAAAGCTTCATCGGACAGTGGCGGGAGGT
ATGAAAGAGTCTCGAACTTCTTCAAGCCAGTTGGTGGCCACACCTTCATG
CATTGGACTCTT
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