CF834231

Overview
NameCF834231
Unique NameCF834231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG_HELPJ (Elongation factor G OS=Helicobacter pylori J99 GN=fusA PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 58/192 (30.21%), Postives = 87/192 (45.31%), Query Frame = 1
Query:   19 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKG 546
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P++E FG+S  LR+AT G+      FDH+  +      P   A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG_HELPH (Elongation factor G OS=Helicobacter pylori (strain HPAG1) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 58/192 (30.21%), Postives = 87/192 (45.31%), Query Frame = 1
Query:   19 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKG 546
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P++E FG+S  LR+AT G+      FDH+  +      P   A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG_HELPG (Elongation factor G OS=Helicobacter pylori (strain G27) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 58/192 (30.21%), Postives = 87/192 (45.31%), Query Frame = 1
Query:   19 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKG 546
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P++E FG+S  LR+AT G+      FDH+  +      P   A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG_HELP2 (Elongation factor G OS=Helicobacter pylori (strain P12) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 58/192 (30.21%), Postives = 87/192 (45.31%), Query Frame = 1
Query:   19 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKG 546
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P++E FG+S  LR+AT G+      FDH+  +      P   A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG_HELAH (Elongation factor G OS=Helicobacter acinonychis (strain Sheeba) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 58/192 (30.21%), Postives = 87/192 (45.31%), Query Frame = 1
Query:   19 GVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-------DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKG 546
            G +++NEI   V+          G Q A + G LA   +  + F+V        DV     A    G      A R        A P LLEP+  VE++ PE+ +G +   LN++RG +     R G  + N  A++P++E FG+S  LR+AT G+      FDH+  +      P   A ++V    KRKG
Sbjct:  521 GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPV--VDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRA-------ANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVN--AFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEV------PSNIAKEIV---EKRKG 692          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG2_SHESM (Elongation factor G 2 OS=Shewanella sp. (strain MR-4) GN=fusA2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 47/165 (28.48%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   49 SVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRK 543
            +V  GF      G +A   +  + FE+ D   HA        ++   A+     S   AKP+LLEP+  V++ +P+  +G +   LN++RG + +++   G     +KA +P+ E FG+ GTLR  TSG+      F H+         P + A ++V  +++RK
Sbjct:  537 AVEKGFASMMNTGTIAGFPVLDVEFELTDGAYHAVDSSAIAFEI--AAKAAFRQSIAKAKPQLLEPIMKVDVFSPDDNVGDVIGDLNRRRGMIKDQV--AGVTGVRVKADVPLSEMFGYIGTLRTMTSGRGQFSMEFSHYSPC------PNSVADKVVEQVKERK 691          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG_TROWT (Elongation factor G OS=Tropheryma whipplei (strain Twist) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 51/157 (32.48%), Postives = 71/157 (45.22%), Query Frame = 1
Query:    7 DMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLH-----ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFD 462
            D   G +   E   SV AG + A + G LA     GI   + D   H       A    G Q    A R        A P LLEP+  VE++ P++ +G +   LN +RGH+       G  +  I+A +P+ E FG+ G LR+ TSG+A     FD
Sbjct:  534 DTVTGGRIPKEYIPSVDAGIRDAMQVGVLAGYPTVGIKATLVDGAYHDVDSSEMAFRIAGSQAFKEASR-------RADPTLLEPIMSVEVRTPDEYMGDVIGDLNSRRGHIQSMQDSSGIKV--IQARVPLSEMFGYIGDLRSKTSGRAVYSMTFD 681          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG_TROW8 (Elongation factor G OS=Tropheryma whipplei (strain TW08/27) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 51/157 (32.48%), Postives = 71/157 (45.22%), Query Frame = 1
Query:    7 DMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLH-----ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFD 462
            D   G +   E   SV AG + A + G LA     GI   + D   H       A    G Q    A R        A P LLEP+  VE++ P++ +G +   LN +RGH+       G  +  I+A +P+ E FG+ G LR+ TSG+A     FD
Sbjct:  534 DTVTGGRIPKEYIPSVDAGIRDAMQVGVLAGYPTVGIKATLVDGAYHDVDSSEMAFRIAGSQAFKEASR-------RADPTLLEPIMSVEVRTPDEYMGDVIGDLNSRRGHIQSMQDSSGIKV--IQARVPLSEMFGYIGDLRSKTSGRAVYSMTFD 681          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG_STRRA (Elongation factor G (Fragment) OS=Streptomyces ramocissimus GN=fus PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 49/145 (33.79%), Postives = 68/145 (46.90%), Query Frame = 1
Query:   49 SVVAGFQWASKEGALAEENMRGICFEVCDVVLHAD-----AIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHW 468
            SV AG Q A + G LA   M G+   + D   H       A    G Q    A R        AKP LLEP+  VE+  PE  +G +   +N +RG +    +R G  +  +K  +P+ E FG+ G LR+ TSG+A     FD +
Sbjct:  188 SVDAGAQEAMQFGILAGYEMTGVRVTLLDGAYHEVDSSELAFKIAGSQAFKEAAR-------KAKPVLLEPMMAVEVTTPEDYMGEVIGDINSRRGQIQAMEERAGARV--VKGLVPLSEMFGYVGDLRSKTSGRASYSMQFDSY 323          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG_NOCSJ (Elongation factor G OS=Nocardioides sp. (strain BAA-499 / JS614) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 51/145 (35.17%), Postives = 69/145 (47.59%), Query Frame = 1
Query:   49 SVVAGFQWASKEGALAEENMRGICFEVCDVVLHAD-----AIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHW 468
            SV  G Q A + G LA   M  +   + D   H       A    G Q    A R        AKP LLEP++ VE+  PE  LG +   +N +RGH+  + +R G  +  I A +P+ E FG+ G LR+ TSGQA     FD +
Sbjct:  550 SVDQGAQEAMEFGVLAGYPMVDVKVTLEDGAYHDVDSSELAFKIAGNQAFKEAAR-------QAKPVLLEPMFAVEVTTPETFLGTVIGDINSRRGHIQAQEERHGDMV--ISALVPLSEMFGYVGDLRSKTSGQASYSMEFDSY 685          
The following BLAST results are available for this feature:
BLAST of CF834231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
EFG_HELPJ4.580e-1130.21Elongation factor G OS=Helicobacter pylori J99 GN=... [more]
EFG_HELPH4.580e-1130.21Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELPG4.580e-1130.21Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELP24.580e-1130.21Elongation factor G OS=Helicobacter pylori (strain... [more]
EFG_HELAH4.580e-1130.21Elongation factor G OS=Helicobacter acinonychis (s... [more]
EFG2_SHESM5.982e-1128.48Elongation factor G 2 OS=Shewanella sp. (strain MR... [more]
EFG_TROWT7.813e-1132.48Elongation factor G OS=Tropheryma whipplei (strain... [more]
EFG_TROW87.813e-1132.48Elongation factor G OS=Tropheryma whipplei (strain... [more]
EFG_STRRA7.813e-1133.79Elongation factor G (Fragment) OS=Streptomyces ram... [more]
EFG_NOCSJ7.813e-1135.17Elongation factor G OS=Nocardioides sp. (strain BA... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05C14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834231 ID=CF834231; Name=CF834231; organism=Citrus sinensis; type=EST; length=672bp
GTCTTTGATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTC
TGTTGTTGCTGGTTTCCAGTGGGCATCGAAAGAAGGTGCGCTGGCTGAAG
AGAACATGAGAGGTATCTGCTTTGAAGTATGTGATGTTGTTCTTCACGCT
GATGCCATTCACAGAGGTGGTGGTCAAGTCATTCCTACTGCTAGGAGGGT
CATATATGCTTCCCAGCTCACAGCCAAGCCCAGGCTTCTTGAGCCTGTCT
ACATGGTCGAAATACAGGCTCCCGAGCAGGCCCTTGGTGGTATTTACAGT
GTTCTCAATCAGAAACGTGGTCACGTGTTCGAGGAAATGCAGAGACCTGG
TACCCCCCTTTACAACATCAAGGCTTACCTTCCCGTCATCGAGTCCTTTG
GATTCTCAGGCACTTTGAGGGCTGCAACGTCAGGACAGGCCTTCCCACAA
TGTGTGTTTGATCACTGGGACATGATGTCATCCGATCCACTGGAGCCTGG
TACACAGGCTGCACAGCTTGTTGCTGATATCAGGAAGAGGAAGGGCTTGA
AGGAGCAAATGACACCACTATCTGAGTTTGAGGACAAGCTGTAAACATTT
CGTCTTGACATCAAGGGTGAGATTGCGCAGCTTGTTGCTGATATCAGGAA
GAGGGAGCAAATGACACCGCTA
back to top