CF834231

Overview
NameCF834231
Unique NameCF834231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG_GRAFK (Elongation factor G OS=Gramella forsetii (strain KT0803) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 55/177 (31.07%), Postives = 80/177 (45.20%), Query Frame = 1
Query:    7 DMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPR---LLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVAD 528
            D+ KG +   E   SV  GF+ A K G LA     G   +   V L   + H      +          +  AK     +LEP+  VE+  PE+ +G I   LN++RG V     R G  +  IKA +P+ E FG+  TLR  +SG+A     F H+    S+  E   +AA+  A+
Sbjct:  533 DVIKGGRIPKEFVPSVEKGFKEAMKNGPLA-----GFTMDSLKVTLKDGSFHPVDSDQLSFELAAKMGYKDAAKKAGAVILEPIMKVEVVTPEENMGDIVGDLNRRRGQVNNMSDRSGAKV--IKAEVPLSEMFGYVTTLRTLSSGRATSTMEFSHYAETPSNISEEVIKAAKGAAN 702          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG_BACFR (Elongation factor G OS=Bacteroides fragilis GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 1
Query:   19 GVQYLNEIKD---------SVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSS 483
            G+Q+++E+K          SV  GFQ A K G LA   +  +   + D   H     +   ++   A +    +   A P L+EP+  +E+  PE+ +G +   LN++RG V E M+   +    +KA +P+ E FG+   LR  TSG+A    V+ H   +SS
Sbjct:  528 GLQFVDEVKGGNIPKEFIPSVQKGFQTAMKNGVLAGYPLDSLKVTLVDGSFHPVDSDQLSFEIC--AIQAYKNACAKAGPVLMEPIMKLEVVTPEENMGDVIGDLNKRRGQV-EGMESSRSGARIVKAMVPLAEMFGYVTALRTITSGRATSSMVYSHHAQVSS 688          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG_BACFN (Elongation factor G OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 1
Query:   19 GVQYLNEIKD---------SVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSS 483
            G+Q+++E+K          SV  GFQ A K G LA   +  +   + D   H     +   ++   A +    +   A P L+EP+  +E+  PE+ +G +   LN++RG V E M+   +    +KA +P+ E FG+   LR  TSG+A    V+ H   +SS
Sbjct:  528 GLQFVDEVKGGNIPKEFIPSVQKGFQTAMKNGVLAGYPLDSLKVTLVDGSFHPVDSDQLSFEIC--AIQAYKNACAKAGPVLMEPIMKLEVVTPEENMGDVIGDLNKRRGQV-EGMESSRSGARIVKAMVPLAEMFGYVTALRTITSGRATSSMVYSHHAQVSS 688          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG2_SHEDO (Elongation factor G 2 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fusA2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 49/169 (28.99%), Postives = 81/169 (47.93%), Query Frame = 1
Query:   37 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRK 543
            E   +V  GF      G +A   +  + FE+ D   HA        ++   A+     S   AKP+LLEP+  V++ +P+  +G +   LN++RG + +  Q  G     IKA +P+ E FG+ GTLR  TSG+      F H+         P + + ++V  +++RK
Sbjct:  533 EFWPAVQKGFGSMMNTGTIAGFPVLDVEFELTDGAFHAVDSSAIAFEI--AAKGAFRQSIAKAKPQLLEPIMKVDVFSPDDNVGDVIGDLNRRRGMIKD--QNAGVTGVRIKADVPLSEMFGYIGTLRTMTSGRGQFSMEFAHYAAC------PNSVSEKVVTQVKERK 691          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EFG2_SACD2 (Elongation factor G 2 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fusA2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 49/169 (28.99%), Postives = 79/169 (46.75%), Query Frame = 1
Query:   37 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRK 543
            E   ++  GF     EG LA   +  +  E+ D   HA        ++   A+     S   A P+++EP+  V++  PE  +G +   LN++RG + +  Q PG     IKA +P+ E FG+ G LR  TSG+      F H+         P   A +++A+ +KRK
Sbjct:  533 EFFPAIEKGFSTMMAEGPLAGYPVLDVEIELYDGSYHAVDSSAVAFEI--AAKGAFRQSMPKAGPQIIEPIMKVDVFTPEDHVGDVIGDLNRRRGMIKD--QEPGVTGVRIKADVPLSEMFGYIGHLRTMTSGRGQFSMEFSHYLPC------PNAVAEEVIAEAKKRK 691          
The following BLAST results are available for this feature:
BLAST of CF834231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
EFG_GRAFK7.813e-1131.07Elongation factor G OS=Gramella forsetii (strain K... [more]
EFG_BACFR7.813e-1129.88Elongation factor G OS=Bacteroides fragilis GN=fus... [more]
EFG_BACFN7.813e-1129.88Elongation factor G OS=Bacteroides fragilis (strai... [more]
EFG2_SHEDO7.813e-1128.99Elongation factor G 2 OS=Shewanella denitrificans ... [more]
EFG2_SACD27.813e-1128.99Elongation factor G 2 OS=Saccharophagus degradans ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05C14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834231 ID=CF834231; Name=CF834231; organism=Citrus sinensis; type=EST; length=672bp
GTCTTTGATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTC
TGTTGTTGCTGGTTTCCAGTGGGCATCGAAAGAAGGTGCGCTGGCTGAAG
AGAACATGAGAGGTATCTGCTTTGAAGTATGTGATGTTGTTCTTCACGCT
GATGCCATTCACAGAGGTGGTGGTCAAGTCATTCCTACTGCTAGGAGGGT
CATATATGCTTCCCAGCTCACAGCCAAGCCCAGGCTTCTTGAGCCTGTCT
ACATGGTCGAAATACAGGCTCCCGAGCAGGCCCTTGGTGGTATTTACAGT
GTTCTCAATCAGAAACGTGGTCACGTGTTCGAGGAAATGCAGAGACCTGG
TACCCCCCTTTACAACATCAAGGCTTACCTTCCCGTCATCGAGTCCTTTG
GATTCTCAGGCACTTTGAGGGCTGCAACGTCAGGACAGGCCTTCCCACAA
TGTGTGTTTGATCACTGGGACATGATGTCATCCGATCCACTGGAGCCTGG
TACACAGGCTGCACAGCTTGTTGCTGATATCAGGAAGAGGAAGGGCTTGA
AGGAGCAAATGACACCACTATCTGAGTTTGAGGACAAGCTGTAAACATTT
CGTCTTGACATCAAGGGTGAGATTGCGCAGCTTGTTGCTGATATCAGGAA
GAGGGAGCAAATGACACCGCTA
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