CF834231

Overview
NameCF834231
Unique NameCF834231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.836e-47
Identity = 91/199 (45.73%), Postives = 129/199 (64.82%), Query Frame = 1
Query:   31 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQ------------AAQLVADIRKRKGLKEQMTPLSEFEDKL 591
            LN +K+ +  GFQW ++EG L +E +R + F + DVVL  + I+RGGGQ+IPTARRV Y+S LTA PRL+EPVYMVE+ AP  +L  IY +L ++RGHV +++ RPG+PLY ++A +PVI+S GF   LR  T GQA  Q VFDHW ++  DPL+   +            A   +   R+RKGL E ++    F+ ++
Sbjct:  772 LNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGLVEDVSTTRYFDQEM 970          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.154e-46
Identity = 88/199 (44.22%), Postives = 127/199 (63.82%), Query Frame = 1
Query:   31 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 591
            L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  759 LGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.507e-46
Identity = 88/199 (44.22%), Postives = 127/199 (63.82%), Query Frame = 1
Query:   31 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 591
            L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  759 LGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.507e-46
Identity = 88/199 (44.22%), Postives = 127/199 (63.82%), Query Frame = 1
Query:   31 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 591
            L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  758 LGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 956          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.507e-46
Identity = 88/199 (44.22%), Postives = 127/199 (63.82%), Query Frame = 1
Query:   31 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 591
            L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  759 LGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.507e-46
Identity = 88/199 (44.22%), Postives = 127/199 (63.82%), Query Frame = 1
Query:   31 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 591
            L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  759 LGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.578e-34
Identity = 74/193 (38.34%), Postives = 117/193 (60.62%), Query Frame = 1
Query:    1 VFDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 579
            + D   G+QYL EI+D +V GF+WA++ G LA+E MRG+   + D V+H D  HRG  Q++P  +  I+A+ L+A+P +LEP+  ++I+     +G + SVLN+ RG + +  Q+    +  ++A LPV+ESF  S  LRAA +G+ F    F  W  M      P +  A +V  +RK+KGLKE++   ++F
Sbjct:  552 IVDRTSGIQYLREIRDYIVQGFRWATEAGPLAQEPMRGLKVVLTDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTILEPLMKLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPM------PESILADMVKQLRKKKGLKEEIPKPTDF 736          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.911e-33
Identity = 73/193 (37.82%), Postives = 116/193 (60.10%), Query Frame = 1
Query:    1 VFDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 579
            + D   G+QYL EI+D +V GF+WA++ G LA+E +RG+   + D V+H D  HRG  Q++P  +  I+A+ L+AKP +LEP+  ++I+     +G + SVLN+ RG + +  Q+    +  ++A LPV+ESF  S  LRAA +G+ F    F  W  +      P +    LV  +RK+KGLKE++   ++F
Sbjct:  552 IVDKTSGIQYLREIRDYIVQGFRWATEAGPLAQEPIRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAMLSAKPTVLEPLLRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPV------PESMLLDLVKQLRKKKGLKEEIPKPTDF 736          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.239e-32
Identity = 72/193 (37.31%), Postives = 112/193 (58.03%), Query Frame = 1
Query:    1 VFDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 579
            + D   G+QYL EI+D +V GF+W+ + G LA+E MRG+   + D V+H D  HRG  Q++P  +  I+A+ L+A+P LLEP+  ++I+     +G + SVLN+ RG + +  Q+       ++A LPV+ESF  S  LRAA +G+ F    F  W         P +     V  +RK+KGLKE++   ++F
Sbjct:  552 IVDKTSGIQYLREIRDYIVQGFRWSMEAGPLAQEPMRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTLLEPLMRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQEYMAF--LRAELPVLESFNISDELRAAAAGKIFWSMQFARWAPF------PESMLGDFVKQLRKKKGLKEEIPKPTDF 736          
BLAST of CF834231 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.618e-32
Identity = 74/184 (40.22%), Postives = 111/184 (60.33%), Query Frame = 1
Query:    7 DMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 558
            D+  GVQ+L E+KD+++ GF+ A +EG LA E +RG+   + D ++H D  HRG GQ+ P  R  IYA  LTAKP LLEP+  ++I+AP + LG I +++ +KRG + + +Q+    +  I A +PV E+F  +  LR AT+G+A     F  W  +      P +    LV  IR+RKGLK +
Sbjct:  551 DLTTGVQHLREVKDTIIQGFRLAMREGPLAMEPVRGVKVILHDAIIHEDPAHRGPGQIYPAVRNAIYAGMLTAKPTLLEPIQKLDIKAPMEYLGNITTIITKKRGKILQVLQQGA--VARIIAEIPVAETFDLAEQLRGATAGKAIWGQEFSRWAPV------PDSMLLDLVRKIRERKGLKPE 726          
The following BLAST results are available for this feature:
BLAST of CF834231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
SN114_SCHPO8.836e-4745.73114 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK1.154e-4644.22116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB1.507e-4644.22116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE1.507e-4644.22116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN1.507e-4644.22116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN1.507e-4644.22116 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_THENV8.578e-3438.34Elongation factor 2 OS=Thermoproteus neutrophilus ... [more]
EF2_PYRIL1.911e-3337.82Elongation factor 2 OS=Pyrobaculum islandicum (str... [more]
EF2_PYRAE1.239e-3237.31Elongation factor 2 OS=Pyrobaculum aerophilum GN=f... [more]
EF2_STAMF1.618e-3240.22Elongation factor 2 OS=Staphylothermus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05C14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834231 ID=CF834231; Name=CF834231; organism=Citrus sinensis; type=EST; length=672bp
GTCTTTGATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAGGATTC
TGTTGTTGCTGGTTTCCAGTGGGCATCGAAAGAAGGTGCGCTGGCTGAAG
AGAACATGAGAGGTATCTGCTTTGAAGTATGTGATGTTGTTCTTCACGCT
GATGCCATTCACAGAGGTGGTGGTCAAGTCATTCCTACTGCTAGGAGGGT
CATATATGCTTCCCAGCTCACAGCCAAGCCCAGGCTTCTTGAGCCTGTCT
ACATGGTCGAAATACAGGCTCCCGAGCAGGCCCTTGGTGGTATTTACAGT
GTTCTCAATCAGAAACGTGGTCACGTGTTCGAGGAAATGCAGAGACCTGG
TACCCCCCTTTACAACATCAAGGCTTACCTTCCCGTCATCGAGTCCTTTG
GATTCTCAGGCACTTTGAGGGCTGCAACGTCAGGACAGGCCTTCCCACAA
TGTGTGTTTGATCACTGGGACATGATGTCATCCGATCCACTGGAGCCTGG
TACACAGGCTGCACAGCTTGTTGCTGATATCAGGAAGAGGAAGGGCTTGA
AGGAGCAAATGACACCACTATCTGAGTTTGAGGACAAGCTGTAAACATTT
CGTCTTGACATCAAGGGTGAGATTGCGCAGCTTGTTGCTGATATCAGGAA
GAGGGAGCAAATGACACCGCTA
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