CF834252

Overview
NameCF834252
Unique NameCF834252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.822e-47
Identity = 84/135 (62.22%), Postives = 106/135 (78.52%), Query Frame = -2
Query:  160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564
            GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A+R+PG+G+ TNII+GG+ECG G +S V +RIGF+  +CG  G+ PG+NLD  NQ  +G+ L+
Sbjct:  184 GRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLL 318          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.287e-47
Identity = 83/135 (61.48%), Postives = 107/135 (79.26%), Query Frame = -2
Query:  160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564
            GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VII  W PS+ D  A+RLPG+G+ TNII+GG+ECG+G ++ V +RIGF+  +C   G+ PGDNLD  NQ  +G+ L+
Sbjct:  190 GRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALL 324          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.287e-47
Identity = 83/135 (61.48%), Postives = 105/135 (77.78%), Query Frame = -2
Query:  160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564
            GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD ++SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A+R+PG+G+ TNII+GG+ECG G +S V +RIGF+  +CG  G+ PGDNLD  NQ  +G+ L+
Sbjct:  178 GRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLL 312          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.211e-47
Identity = 84/135 (62.22%), Postives = 105/135 (77.78%), Query Frame = -2
Query:  160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564
            GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A+R+PG+G+ TNII+GG+ECG G +S V +RIGF+  +CG  G+ PGDNLD  NQ  +G+ L+
Sbjct:  180 GRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLL 314          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.072e-46
Identity = 84/135 (62.22%), Postives = 105/135 (77.78%), Query Frame = -2
Query:  160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564
            GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A+R+PG+G+ TNII+GG+ECG G +S V +RIGF+  +CG  G+ PGDNLD  NQ  +G+ L+
Sbjct:  180 GRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLL 314          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.389e-46
Identity = 79/127 (62.20%), Postives = 102/127 (80.31%), Query Frame = -2
Query:  184 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQ 564
            GRGP+QL+WN NY +CG A+G DLLNNPDL++ DPV++FK+AIWFWMT Q PKPSCH VI+ +W+PS  D  A R+PGYG+ TNII+GG+ECG+G ++ VA+RIGF+  +C   G+ PG NLD YNQ
Sbjct:  182 GRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQ 308          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.641e-45
Identity = 82/136 (60.29%), Postives = 104/136 (76.47%), Query Frame = -2
Query:  157 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLMA 564
            GRGPIQL++N NY   GEA+G DLLNNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ A R+PGYG+ TNII+GG+ECG G +  VANRIGF+  +C   GI  G NLD Y+Q P+   L A
Sbjct:  197 GRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.004e-44
Identity = 81/137 (59.12%), Postives = 104/137 (75.91%), Query Frame = -2
Query:  154 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLMAQ 564
            GRGPIQ+++N NY  CG A+G +LLNNPDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA D  A+RLPGYG+ TNII+GG+ECG G ++ V +RIGF+  +C   G+ PGDN+D  NQ  +   L+ +
Sbjct:  196 GRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLE 332          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 2.920e-44
Identity = 80/130 (61.54%), Postives = 98/130 (75.38%), Query Frame = -2
Query:  175 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPY 564
            GRGPIQ+T+N NY   G+A+G DLLNNPDL+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  A R+PGYG  TNII+GG+ECG G +  VA+RIGF+  +C   G+  GDNLD YNQ PY
Sbjct:  188 GRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.217e-43
Identity = 80/127 (62.99%), Postives = 97/127 (76.38%), Query Frame = -2
Query:  184 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQ 564
            GRGPIQLT   NY   G+A+G DL+NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A+R PGYG+ TNII+GGIECGKG N  V +RIGF+  +C    + PGDNLD Y+Q
Sbjct:  115 GRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQ 241          
The following BLAST results are available for this feature:
BLAST of CF834252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIC_SOLLC2.822e-4762.22Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHIT_SOLTU6.287e-4761.48Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_SOLTU6.287e-4761.48Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU8.211e-4762.22Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_SOLTU1.072e-4662.22Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_BRANA2.389e-4662.20Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI9_ORYSJ2.641e-4560.29Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_TOBAC1.004e-4459.12Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI3_ORYSJ2.920e-4461.54Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_SOLLC4.217e-4362.99Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05D04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834252 ID=CF834252; Name=CF834252; organism=Citrus sinensis; type=EST; length=565bp
TGTTGGATCAGTCTTATGTAATTTCCCTACAATAAGAGCGTAACAAACTA
ACAATTTATTTGTCCACCTACAAGTGTGACATCTAAAGTTCTTATTACCT
AGCATTTTATTAAGCTTATTTTACTAAAACGCTGATCATGATGATCACAT
AGATTGTGCCATCAAATTATGGCCATAAGGCCCTTGGTTGTATCAATCAA
GATTGTCGCCAGGCTGAATCCCAAACTTGCCACAAAAAGTGGTAAAGAAC
CCAATACGGTTAGCTACAAAGCTATTCCAACCTTTGCCACATTCAATTCC
ACCGCTGATTATATTTGTGGTTAGACCGTATCCCGGAAGCCGGCTGGCGT
TTACGTCATTTGCTGATGGTTTCCATTCGTCGATAATGACTTCGTGGCAC
GATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAA
TGATAGTACTGGATCAGTGGCAAGAAGGTCTGGATTGTTCAACAAGTCCA
CCCCCAAGGCTTCTCCGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGA
ATTGGACCTCGGCCA
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