CF834252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 2.822e-47 Identity = 84/135 (62.22%), Postives = 106/135 (78.52%), Query Frame = -2 Query: 160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564 GRGPIQ++ N NY CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VI W+PS D A+R+PG+G+ TNII+GG+ECG G +S V +RIGF+ +CG G+ PG+NLD NQ +G+ L+ Sbjct: 184 GRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLL 318
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 6.287e-47 Identity = 83/135 (61.48%), Postives = 107/135 (79.26%), Query Frame = -2 Query: 160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564 GRGPIQ++ N NY CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VII W PS+ D A+RLPG+G+ TNII+GG+ECG+G ++ V +RIGF+ +C G+ PGDNLD NQ +G+ L+ Sbjct: 190 GRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALL 324
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 6.287e-47 Identity = 83/135 (61.48%), Postives = 105/135 (77.78%), Query Frame = -2 Query: 160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564 GRGPIQ++ N NY CG A+GVDLLNNPDL+ATD ++SFKSAIWFWMT Q PKPSCH+VI W+PS D A+R+PG+G+ TNII+GG+ECG G +S V +RIGF+ +CG G+ PGDNLD NQ +G+ L+ Sbjct: 178 GRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLL 312
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 8.211e-47 Identity = 84/135 (62.22%), Postives = 105/135 (77.78%), Query Frame = -2 Query: 160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564 GRGPIQ++ N NY CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI W+PS D A+R+PG+G+ TNII+GG+ECG G +S V +RIGF+ +CG G+ PGDNLD NQ +G+ L+ Sbjct: 180 GRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLL 314
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.072e-46 Identity = 84/135 (62.22%), Postives = 105/135 (77.78%), Query Frame = -2 Query: 160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564 GRGPIQ++ N NY CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI W+PS D A+R+PG+G+ TNII+GG+ECG G +S V +RIGF+ +CG G+ PGDNLD NQ +G+ L+ Sbjct: 180 GRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLL 314
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 2.389e-46 Identity = 79/127 (62.20%), Postives = 102/127 (80.31%), Query Frame = -2 Query: 184 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQ 564 GRGP+QL+WN NY +CG A+G DLLNNPDL++ DPV++FK+AIWFWMT Q PKPSCH VI+ +W+PS D A R+PGYG+ TNII+GG+ECG+G ++ VA+RIGF+ +C G+ PG NLD YNQ Sbjct: 182 GRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQ 308
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 2.641e-45 Identity = 82/136 (60.29%), Postives = 104/136 (76.47%), Query Frame = -2 Query: 157 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLMA 564 GRGPIQL++N NY GEA+G DLLNNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI +W PS+ D+ A R+PGYG+ TNII+GG+ECG G + VANRIGF+ +C GI G NLD Y+Q P+ L A Sbjct: 197 GRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.004e-44 Identity = 81/137 (59.12%), Postives = 104/137 (75.91%), Query Frame = -2 Query: 154 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLMAQ 564 GRGPIQ+++N NY CG A+G +LLNNPDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI W PSA D A+RLPGYG+ TNII+GG+ECG G ++ V +RIGF+ +C G+ PGDN+D NQ + L+ + Sbjct: 196 GRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLE 332
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2) HSP 1 Score: 177.948 bits (450), Expect = 2.920e-44 Identity = 80/130 (61.54%), Postives = 98/130 (75.38%), Query Frame = -2 Query: 175 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPY 564 GRGPIQ+T+N NY G+A+G DLLNNPDL+A+D +SFK+A WFWMT Q PKPSCH VI +W PSA+D A R+PGYG TNII+GG+ECG G + VA+RIGF+ +C G+ GDNLD YNQ PY Sbjct: 188 GRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 4.217e-43 Identity = 80/127 (62.99%), Postives = 97/127 (76.38%), Query Frame = -2 Query: 184 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQ 564 GRGPIQLT NY G+A+G DL+NNPDL+ATD +SFK+AIWFWMTAQ KPSCH+VI +W PSA D +A+R PGYG+ TNII+GGIECGKG N V +RIGF+ +C + PGDNLD Y+Q Sbjct: 115 GRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQ 241 The following BLAST results are available for this feature:
BLAST of CF834252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834252 ID=CF834252; Name=CF834252; organism=Citrus sinensis; type=EST; length=565bpback to top |