CF834252

Overview
NameCF834252
Unique NameCF834252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.039e-41
Identity = 75/132 (56.82%), Postives = 104/132 (78.79%), Query Frame = -2
Query:  172 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVA-NRIGFFTTFCGKFGIQPGDNLD*YNQGPYG 564
            GRGPIQLT   NY   G+ALG+DL+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++ RLPGYG+ TNII+GG ECGKG+++  A +R+G++  +C  F +  GDN+   +Q PYG
Sbjct:  123 GRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.357e-41
Identity = 78/135 (57.78%), Postives = 96/135 (71.11%), Query Frame = -2
Query:  163 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGW-NSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNL 564
            GRGPIQL+WN NY  CG+ L + LL  P+L+ TDPV+SFK+AIWFWM  Q PKPSCH VI   W PSA D+ A R+PGYG+ TNII+GGIECG+G  N+   +RIGF+  +C   G   G NLD Y Q P+G+ L
Sbjct:  199 GRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.772e-41
Identity = 77/129 (59.69%), Postives = 97/129 (75.19%), Query Frame = -2
Query:  184 GRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQ 564
            GRGPIQLT   NY R G+ +GV  DL+NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A+R+PGYG+ TNII+GG+EC  G N+ V +RIGF+  +CG   +  G+NLD  NQ
Sbjct:  119 GRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQ 247          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.793e-41
Identity = 77/127 (60.63%), Postives = 92/127 (72.44%), Query Frame = -2
Query:  184 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQ 564
            GRGPIQLT   NY   G ALG+DL+ NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  A R+PGYG+ TNII+GGIECG G N    +RIG++  +C   G   G NLD YNQ
Sbjct:  130 GRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQ 256          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.959e-40
Identity = 77/127 (60.63%), Postives = 94/127 (74.02%), Query Frame = -2
Query:  184 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQ 564
            GRGPIQLT   NY   G+A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A+R+PGYG+ TNII+GGIECGKG N+ V +RIG++        + PGDNLD YNQ
Sbjct:  122 GRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQ 248          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.959e-40
Identity = 77/127 (60.63%), Postives = 94/127 (74.02%), Query Frame = -2
Query:  184 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQ 564
            GRGPIQLT   NY + G A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A+R PG G+ TNII+GGIECG G N+ V +RIG++  +CG   + PGDNLD YNQ
Sbjct:  121 GRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQ 247          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.558e-40
Identity = 76/127 (59.84%), Postives = 95/127 (74.80%), Query Frame = -2
Query:  184 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQ 564
            GRGPIQLT N NY   G+A+  DL+NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA D +A R+PGYG+ TNII+GGIECG G ++ V +R+GF+  +C  FG+ PG NLD  NQ
Sbjct:  190 GRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQ 316          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.364e-40
Identity = 75/129 (58.14%), Postives = 94/129 (72.87%), Query Frame = -2
Query:  184 GRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQ 564
            GRGPIQLT   NY R G+ +GV  +L+NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A+R+PGYG+ TNII+G  ECG G N+   +RIGF+  +CG   +  G+NLD  NQ
Sbjct:  119 GRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQ 247          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 9.722e-40
Identity = 73/131 (55.73%), Postives = 95/131 (72.52%), Query Frame = -2
Query:  172 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYG 564
            GRGPIQL++N NY   G+A+G DLL +PDL+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA+D  A R+PGYG+ TNII+GG+ECG G +  VA+RIGF+  +C   G+    NLD Y+Q P+G
Sbjct:  195 GRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.552e-37
Identity = 72/130 (55.38%), Postives = 91/130 (70.00%), Query Frame = -2
Query:  175 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPY 564
            GRGPIQ+++N NY   G+A+GVDLL NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D  A R+PGYG+ TNII GG+ECGKG  S VA+RIG++            DNLD YNQ P+
Sbjct:   81 GRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
The following BLAST results are available for this feature:
BLAST of CF834252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI11_ORYSJ1.039e-4156.82Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI6_POPTR1.357e-4157.78Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIA_SOLCI1.772e-4159.69Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI8_ORYSJ8.793e-4160.63Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY1.959e-4060.63Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIP_TOBAC1.959e-4060.63Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIX_PEA2.558e-4059.84Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIA_SOLLC4.364e-4058.14Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI12_ORYSJ9.722e-4055.73Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_AVESA1.552e-3755.38Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05D04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834252 ID=CF834252; Name=CF834252; organism=Citrus sinensis; type=EST; length=565bp
TGTTGGATCAGTCTTATGTAATTTCCCTACAATAAGAGCGTAACAAACTA
ACAATTTATTTGTCCACCTACAAGTGTGACATCTAAAGTTCTTATTACCT
AGCATTTTATTAAGCTTATTTTACTAAAACGCTGATCATGATGATCACAT
AGATTGTGCCATCAAATTATGGCCATAAGGCCCTTGGTTGTATCAATCAA
GATTGTCGCCAGGCTGAATCCCAAACTTGCCACAAAAAGTGGTAAAGAAC
CCAATACGGTTAGCTACAAAGCTATTCCAACCTTTGCCACATTCAATTCC
ACCGCTGATTATATTTGTGGTTAGACCGTATCCCGGAAGCCGGCTGGCGT
TTACGTCATTTGCTGATGGTTTCCATTCGTCGATAATGACTTCGTGGCAC
GATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAA
TGATAGTACTGGATCAGTGGCAAGAAGGTCTGGATTGTTCAACAAGTCCA
CCCCCAAGGCTTCTCCGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGA
ATTGGACCTCGGCCA
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