CF834252

Overview
NameCF834252
Unique NameCF834252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.458e-37
Identity = 70/127 (55.12%), Postives = 89/127 (70.08%), Query Frame = -2
Query:  160 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGW-NSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 537
            N NY  CG+ L + LL  P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA D  A R+PGYG+ TNII+GGIECG+G  N+   NRIGF+ T+C   G   G NLD Y Q P+G+ L+
Sbjct:  171 NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.578e-34
Identity = 62/130 (47.69%), Postives = 92/130 (70.77%), Query Frame = -2
Query:  175 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPY 564
            GRGPIQ++WN NY   G+ALG D L NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P   DV A+R  G+GL TNI++GG+EC +  ++ V NRIGF+  +C   G+  G NLD  +Q P+
Sbjct:  161 GRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.776e-33
Identity = 67/134 (50.00%), Postives = 85/134 (63.43%), Query Frame = -2
Query:  166 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHN 564
            GRGP+QL WN NY  CG  LG +LL+ P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS  D+ A R PG+G+ TNII+ G EC K   +   NRI ++  +C    + PGDNL   NQ  +  N
Sbjct:  174 GRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETFEDN 307          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.776e-33
Identity = 64/136 (47.06%), Postives = 93/136 (68.38%), Query Frame = -2
Query:  157 RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLMA 561
            RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  A R PGYGLTTNI++GG++C  G     A+R+ F+  +C   G+  G NLD + Q P+  ++M+
Sbjct:  202 RGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMS 335          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.319e-33
Identity = 64/136 (47.06%), Postives = 92/136 (67.65%), Query Frame = -2
Query:  157 RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLMA 561
            RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  A R PGYGLTTNI++GG++C  G     A+R+ F+  +C   G+  G NLD + Q P+   +M+
Sbjct:  202 RGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMS 335          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 7.000e-22
Identity = 53/123 (43.09%), Postives = 77/123 (62.60%), Query Frame = -2
Query:  199 RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFV--ANRIGFFTTFCGKFGIQPGDNL 561
            RGPIQLT N NY   G+A+G DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A+R+P  G+  NIIS       G + F   ++ IGF+  +C   G+  G +L
Sbjct:  239 RGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.724e-20
Identity = 53/123 (43.09%), Postives = 70/123 (56.91%), Query Frame = -2
Query:  199 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVAN-RIGFFTTFCGKFGIQPGDNL 564
            GRGP+QL+WN NY   G+A+G D L NP+ +ATD   SFK+A+WFWMT                     +V++    G+G TT  I+G +EC  G N   AN RI F+  +C  FG+ PGDNL
Sbjct:  186 GRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALEC-NGQNQDQANDRIQFYKKYCADFGVAPGDNL 286          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.906e-19
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = -2
Query:  199 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNL 564
            GRGP+QL+WN NY+  G+ L  D LN+PD++  DP++SFK+++WFW+     +     VI+D   P+          G+G T  II+GG EC     + +  R+G++  +C + G+ PG+NL
Sbjct:  144 GRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNL 248          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = -2
Query:  199 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNL 564
            GRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V+   L G+G T   I+G +EC       V  R+ ++  +C +FG+ PG NL
Sbjct:  186 GRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNL 286          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.595e-18
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = -2
Query:  199 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNL 564
            GRGP+Q++WN NY   G+++G D L +PD +A  PVL+F++A+W+W        + H+  +                G+G T   I+G +EC     + V+NR+ ++  FC +FG+ PG NL
Sbjct:  167 GRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNL 269          
The following BLAST results are available for this feature:
BLAST of CF834252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_POPTR3.458e-3755.12Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI10_ORYSJ3.578e-3447.69Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR1.776e-3350.00Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ1.776e-3347.06Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI2.319e-3347.06Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
AGI_URTDI7.000e-2243.09Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIP_BETVU1.724e-2043.09Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIT_DIOJA1.906e-1937.70Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI5_ORYSJ5.546e-1936.89Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_ORYSJ3.595e-1834.43Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05D04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834252 ID=CF834252; Name=CF834252; organism=Citrus sinensis; type=EST; length=565bp
TGTTGGATCAGTCTTATGTAATTTCCCTACAATAAGAGCGTAACAAACTA
ACAATTTATTTGTCCACCTACAAGTGTGACATCTAAAGTTCTTATTACCT
AGCATTTTATTAAGCTTATTTTACTAAAACGCTGATCATGATGATCACAT
AGATTGTGCCATCAAATTATGGCCATAAGGCCCTTGGTTGTATCAATCAA
GATTGTCGCCAGGCTGAATCCCAAACTTGCCACAAAAAGTGGTAAAGAAC
CCAATACGGTTAGCTACAAAGCTATTCCAACCTTTGCCACATTCAATTCC
ACCGCTGATTATATTTGTGGTTAGACCGTATCCCGGAAGCCGGCTGGCGT
TTACGTCATTTGCTGATGGTTTCCATTCGTCGATAATGACTTCGTGGCAC
GATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAA
TGATAGTACTGGATCAGTGGCAAGAAGGTCTGGATTGTTCAACAAGTCCA
CCCCCAAGGCTTCTCCGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGA
ATTGGACCTCGGCCA
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