CF834278

Overview
NameCF834278
Unique NameCF834278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.898e-62
Identity = 115/167 (68.86%), Postives = 130/167 (77.84%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            KVFFD+ +G   AGR+VMEL  DVTPRTA NFRALCTGE GIGK+GK LHYKGS+F R+IPGFMCQ           GESI GSKF DENF  KHTGPGILSMAN+GP T GSQFF+CT KT WLDGKHVVFG+VV+G +VVKA+E VGS  G  ++ VVI DCG+L
Sbjct:    5 KVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.091e-62
Identity = 117/151 (77.48%), Postives = 125/151 (82.78%), Query Frame = -3
Query:  230 MELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 682
            MEL  DV P+TAENFRALCTGEKG+G   KPLHYKGSSF RVIPGFMCQ           GESI G+KF DENF+KKHTGPG+LSMANAGPGT GSQFF+CT KT WLDGKHVVFGQVVEGMDVV+AIEKVGS SG+T KPV IADCGQLS
Sbjct:    1 MELFQDVVPQTAENFRALCTGEKGMGDR-KPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQLS 150          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 8.684e-62
Identity = 112/167 (67.07%), Postives = 129/167 (77.25%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            +VFFD+T+ G+P GRIVMEL  D+ P+TAENFRALCTGEKG+GKSGKPLH+KGS F R+IP FM Q           GESI G KF DENF +KHTGPG+LSMANAGP T GSQFF+CT KT WLDGKHVVFG+VVEG+D+V  +E  GSSSG      +IADCGQL
Sbjct:    5 RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.601e-61
Identity = 115/167 (68.86%), Postives = 128/167 (76.65%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            +VFFD+T+GG  AG++VMEL  +  P+TAENFRALCTGEKGIGKSGKPL YKGSSF RVI  FMCQ           GESI G+KFADENF  KH G G LSMANAG  T GSQFF+C A T+WLDGKHVVFG V EGMDVVK +E  GS SG+T KPVVIA+CGQL
Sbjct:   13 RVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIGKSGKPLSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 2.139e-60
Identity = 112/167 (67.07%), Postives = 127/167 (76.05%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            KVFFD+T+GG+  GRIVMEL  D+ P+TAENFRALCTGEKG GKSGK LH+KGS F R+IP FM Q           GESI G KF DENF +KHTGPG+LSMAN G  T GSQFF+CT KT WLDGKHVVFG+V+EGMDVVKAIE  GS  G  + P VIADCG++
Sbjct:    5 KVFFDITIGGKKGGRIVMELYNDIVPKTAENFRALCTGEKGKGKSGKKLHFKGSKFHRIIPEFMIQGGDFTEGNGTGGESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.415e-58
Identity = 109/167 (65.27%), Postives = 124/167 (74.25%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            KVFFD+++G +PAGR+ MEL  DV P+TAENFRALCTGEKG+G+ G  LH+KGS F R+IP FM Q           GESI G+KF DENF  KHTGPG LSMANAGP T GSQFF+CT  T WLDG HVVFGQV +GM VVK IEK+GS SG   K V IADCG+L
Sbjct:   23 KVFFDVSIGEEPAGRVTMELFNDVVPKTAENFRALCTGEKGVGEQGVALHFKGSKFHRIIPEFMIQGGDFTRHNGTGGESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.440e-57
Identity = 109/167 (65.27%), Postives = 122/167 (73.05%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            +VFFDM+  GQP GRIVMEL  DV P+TAENFRALCTGEKG G       YKGS F RVIP FMCQ           G+SI G+KF DENF  KHTGPGIL MANAGP T GSQFF+ TAKT WLD +HVVFG VVEGMDVVK +E +GS SG+TNK + + DCGQ+
Sbjct:    5 RVFFDMSADGQPVGRIVMELRSDVVPKTAENFRALCTGEKGFG-------YKGSRFHRVIPNFMCQGGDFTNHNGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQI 164          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.411e-57
Identity = 108/167 (64.67%), Postives = 122/167 (73.05%), Query Frame = -3
Query:  230 VFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 730
            V+ D+   G+P GR+V+EL  DV P+TAENFRALCTGEKG G       YKGS+F RVIP FMCQ           G+SI GS+F DENF  KH GPG+LSMANAGP T GSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SGRT+K +VI DCGQLS
Sbjct:   48 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.098e-56
Identity = 108/167 (64.67%), Postives = 122/167 (73.05%), Query Frame = -3
Query:  230 VFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 730
            V+ D+   GQP GR+V+EL  DV P+TAENFRALCTGEKG G       YKGS+F RVIP FMCQ           G+SI GS+F DENF  KH GPG+LSMANAGP T GSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K +VI DCGQLS
Sbjct:   47 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.435e-56
Identity = 108/167 (64.67%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  230 VFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 730
            V+ D+   GQP GR+V+EL  DV P+TAENFRALCTGEKG G       YKGS+F RVIP FMCQ           G SI GS+F DENF  KH GPG+LSMANAGP T GSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K +VI DCGQLS
Sbjct:   47 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPAFMCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
The following BLAST results are available for this feature:
BLAST of CF834278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
CP19C_ARATH3.898e-6268.86Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
CYPH_ALLCE5.091e-6277.48Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
CYP7_CAEEL8.684e-6267.07Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
PPIA_DICDI9.601e-6168.86Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
CYP2_CAEEL2.139e-6067.07Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
CYP1_CAEEL3.415e-5865.27Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PPIA_BLAGE6.440e-5765.27Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
PPIF_HUMAN8.411e-5764.67Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_RAT1.098e-5664.67Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE1.435e-5664.67Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834278 ID=CF834278; Name=CF834278; organism=Citrus sinensis; type=EST; length=735bp
TTTTTTTTTTTTTTATTTAAAAGGCAGCTCATAGAAAGACATCAAAAACA
GGTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAACA
TAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACACGGCCACATA
GTAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGTGAT
GATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCAGC
GATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTCTCGA
TGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGTGC
TTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGATCC
GGTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGTGT
GCTTCTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGCAGATTGATTCG
CCTCCGGTGCCGTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGAATCC
GGGGATCACACGGCGGAAGGACGAGCCCTTGTAGTGGAGGGGCTTGCCGG
ACTTGCCGATGCCTTTCTCGCCGGTGCAGAGGGCGCGGAAGTTCTCGGCG
GTTCGGGGGGTGACATCGGGGAGGAGCTCCATCACGATCCTGCCGGCGGG
CTGACCGCCGACGGTCATGTCAAAGAACACTTTGG
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