CF834278

Overview
NameCF834278
Unique NameCF834278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.706e-55
Identity = 106/167 (63.47%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            +VFFD+   G+  GRIVMEL  DV P+TAENFRALCTGEKG G       YKGS+F RVIPGFMCQ           G+SI G KFADENF  KHT PGILSMANAG  T GSQFF+CTA T WLDGKHVVFG V +G+D++K +E  GS SG+T+K + IADCGQL
Sbjct:    5 QVFFDLQANGENLGRIVMELRADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 4.615e-55
Identity = 105/166 (63.25%), Postives = 122/166 (73.49%), Query Frame = -3
Query:  233 VFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 730
            VFFD+ V G+P GR+  EL  D  P+TAENFRAL TGEKG G       YKGS F R+IPGFMCQ           G+SI G KF DENF+ KHTGPGILSMANAGP T GSQFF+CTAKTEWLDGKHVVFG+V EGM +V+A+E  GS +G+T+K + IA+CGQL
Sbjct:    6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQL 164          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.028e-54
Identity = 113/168 (67.26%), Postives = 127/168 (75.60%), Query Frame = -3
Query:  233 FFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 727
            FFDMT+GGQPAGRI+MEL PDV P+TAENFRALCTGEKGIG SGK + Y+GS F RVIP FM Q           GESI G+KFADENF+ KHT PG+LSMANAGPGT GSQFF+ T  T  LDGKHVVFG+VVEGMDVV+ IE   + + R +KP   V IA CGQL
Sbjct:    5 FFDMTIGGQPAGRIIMELFPDV-PKTAENFRALCTGEKGIGPSGKKMTYEGSVFHRVIPKFMLQGGDFTLGNGRGGESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIE--ATQTDRGDKPLSEVKIAKCGQL 169          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.754e-54
Identity = 104/167 (62.28%), Postives = 120/167 (71.86%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            KV+FD+ + G+ AGR+V+ L     P+TAENFRALCTGEKG+GKSGKPLHYKGS F R+IP FM Q           GESI G KFADENF  KHTGPG+LSMAN+G  T GSQFF+ T  T WLDG+HVVFG+VV+GMDVV  IE  G  SG     VVIAD G+L
Sbjct:   33 KVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGEL 199          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 5.103e-54
Identity = 106/167 (63.47%), Postives = 120/167 (71.86%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            +VFFDMT   +P GRIVMEL  DV P+TAENFRALCTGEKG G       YKGS F RVIP FMCQ           G+SI G+KF DENF  KHTG GILSMANAG  T GSQFF+CT KT WLD KHVVFG+VVEG+DVVK IE  GS SG+T+K +++A+ G L
Sbjct:   68 RVFFDMTADNEPLGRIVMELRSDVVPKTAENFRALCTGEKGFG-------YKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.320e-53
Identity = 100/167 (59.88%), Postives = 117/167 (70.06%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            KVFFD+ V G+P+GR+  +L  D  P+TAENFRALCTGEKG G SGKPLHYKGS F R+IPGFM Q           GESI G KF DENF  KHTG G+LSMANAGP T GSQFF+   KT WLDG H VFGQ+VEG  V++ +E+ G+ SG     V I DCG++
Sbjct:    8 KVFFDVAVNGKPSGRLTFKLFSDTVPKTAENFRALCTGEKGTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGEI 174          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.320e-53
Identity = 104/167 (62.28%), Postives = 117/167 (70.06%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            KV+FD+ + G+ AGRIVM L     P+T ENFRALCTGEKGIGK+GK LHYKGSSF R+IP FM Q           GESI G KFADENF  KHTGPG LSMANAG  T GSQFF+ T  T WLDG+HVVFG+VV GMDVV  +E  G+ SG     VVI D G+L
Sbjct:   36 KVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGEL 202          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.642e-53
Identity = 104/168 (61.90%), Postives = 121/168 (72.02%), Query Frame = -3
Query:  230 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 733
            +VFFD+T+GG+ AGRIV EL  D+ P+TAENFRALCTGEKG+GK GKPLHYKGS+F RVI  FM Q           GESI G+KF DENF  KH  P +LSMANAGPGT GSQFFV T  T  LDGKHVVFG+V+ G  VV+ IE + +   +  K  VIADCG+LS
Sbjct:   13 RVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVGKLGKPLHYKGSTFHRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKTQGDKPTKDAVIADCGELS 180          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.064e-51
Identity = 98/167 (58.68%), Postives = 117/167 (70.06%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            KVFFD+ +  +PAGRIV  L     P+T ENFRALCTGEKG+G SGKPLHYK S F R+IP FM Q           GESI G KF DENF  KH+ PG+LSMANAGP T GSQFF+ T  T WLDG+H VFG+V+EGMD+VK +E +GS SG  +K   I++ G+L
Sbjct:   31 KVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKIAKISNSGEL 197          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.096e-51
Identity = 100/156 (64.10%), Postives = 113/156 (72.44%), Query Frame = -3
Query:  263 VFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK 730
            V+ D+   GQP GR+V+EL  DV P+TAENFRALCTGEKG G       YKGS+F RVIP FMCQ           G+SI GS+F DENF  KH GPG+LSMANAGP T GSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K
Sbjct:   49 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSK 197          
The following BLAST results are available for this feature:
BLAST of CF834278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
PPIA_HEMPU2.706e-5563.47Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
PPIA_RABIT4.615e-5563.25Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
CYPX_USEUD1.028e-5467.26Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
CP19D_ARATH1.754e-5462.28Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIA_DROME5.103e-5463.47Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
CYP5_RHIOR4.320e-5359.88Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
CP20A_ARATH4.320e-5362.28Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPID_NEUCR5.642e-5361.9041 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
PPIB_DICDI1.064e-5158.68Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPIF_BOVIN3.096e-5164.10Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834278 ID=CF834278; Name=CF834278; organism=Citrus sinensis; type=EST; length=735bp
TTTTTTTTTTTTTTATTTAAAAGGCAGCTCATAGAAAGACATCAAAAACA
GGTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAACA
TAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACACGGCCACATA
GTAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGTGAT
GATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCAGC
GATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTCTCGA
TGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGTGC
TTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGATCC
GGTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGTGT
GCTTCTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGCAGATTGATTCG
CCTCCGGTGCCGTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGAATCC
GGGGATCACACGGCGGAAGGACGAGCCCTTGTAGTGGAGGGGCTTGCCGG
ACTTGCCGATGCCTTTCTCGCCGGTGCAGAGGGCGCGGAAGTTCTCGGCG
GTTCGGGGGGTGACATCGGGGAGGAGCTCCATCACGATCCTGCCGGCGGG
CTGACCGCCGACGGTCATGTCAAAGAACACTTTGG
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