CF834279

Overview
NameCF834279
Unique NameCF834279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:41..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834279 vs. ExPASy Swiss-Prot
Match: PPID_DEBHA (Peptidyl-prolyl cis-trans isomerase D OS=Debaryomyces hansenii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.082e-48
Identity = 97/176 (55.11%), Postives = 120/176 (68.18%), Query Frame = 3
Query:   24 KMPNPKVFFPLTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGSSSGRTNKPV---VIADCGQL 539
            K+  PKVFF ++  G+P GR+V EL+ DV P+TAENFRALCTGEKG  +S GK LHYKGS FHR+I  FMCQ            ESIYG KF DENF   H  P +LSMANAG  TNGSQFF+ T  T  L+GKHVVFG+V++G  +V+ +E+     G  +KPV   +I+DCG+L
Sbjct:    4 KLNRPKVFFDISADGKPKGRVVFELYNDVVPKTAENFRALCTGEKGASESSGKQLHYKGSIFHRIIKDFMCQGGDFTHGSGIGGESIYGEKFEDENFQLTHDKPFLLSMANAGANTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQLER--CDKGENDKPVEDWIISDCGEL 177          
BLAST of CF834279 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 1.413e-48
Identity = 94/167 (56.29%), Postives = 112/167 (67.07%), Query Frame = 3
Query:   39 KVFFPLTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 539
            +V+F +   GQP GR+V +L+ D+ P+TAENFRALCTGEKG G       Y GS FHRVIP FM Q            +SIYG KF DENF K H  PG+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+VV G D+VK +E +GS SG T   +V+A  G+L
Sbjct:    3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162          
BLAST of CF834279 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.410e-48
Identity = 98/173 (56.65%), Postives = 119/173 (68.79%), Query Frame = 3
Query:   27 MPNPKVFFPLTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIG-KSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVG-SSSGRTNKPVVIADCGQL 539
            M   K F  +++GG+  GRIV+EL+ DV P+TAENFR LCTGEKG+G  +G PLHYKG+ FHRVI GFM Q            ESIYG KF DENF  KH   G+LSMAN+GP TNGSQFF+ T +T  LDGKHVVFG+V KGM VV++IE V        ++ VVI DCG++
Sbjct:    1 MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEI 173          
BLAST of CF834279 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.370e-48
Identity = 95/172 (55.23%), Postives = 116/172 (67.44%), Query Frame = 3
Query:   27 MPNPKVFFPLTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGS-SSGRTNKPVVIADCGQL 539
            M NP+VFF + +GG+  G+I  ELFAD  P+TAENFRALCTGEKG  ++G PLH+KGSSFHRVI  FM Q            ESIYG KF DE F   H  P +LSMANAGP TNGSQFF+ T +T  LD KHVVFG+++ G  +V+ IE+  +    R  +PV I DCG+L
Sbjct:    1 MTNPRVFFEVAIGGKTIGKIYFELFADKVPKTAENFRALCTGEKGNTQAGIPLHFKGSSFHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFPYPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTIVDCGEL 172          
BLAST of CF834279 vs. ExPASy Swiss-Prot
Match: CYP11_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus oryzae GN=cyp11 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.159e-48
Identity = 100/173 (57.80%), Postives = 118/173 (68.21%), Query Frame = 3
Query:   27 MPNPKVFFPLTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIE-KVGSSSGRTNKPVVIADCGQL 539
            M NP+VFF + V G   GRIV+ELFAD  P+TAENFRALCTGEKGIGK S  PLHYKGS FHR+I GFMCQ            ESIYG+ F DE+F +KH   G+LSMAN GP T  SQFF+ T  T  LDGKHVVFG+VV G +VV+ +E +      R    V+IA+CG+L
Sbjct:    1 MINPRVFFDIDVDGNRIGRIVIELFADQVPKTAENFRALCTGEKGIGKVSNMPLHYKGSIFHRIIKGFMCQGGDFTHRTGKGGESIYGANFPDESFSRKHDTHGLLSMANRGPNTQTSQFFITTRPTPHLDGKHVVFGRVVSGYNVVEMMENEPVDDQDRPLHNVMIANCGEL 173          
BLAST of CF834279 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.546e-47
Identity = 94/172 (54.65%), Postives = 112/172 (65.12%), Query Frame = 3
Query:   24 KMPNPKVFFPLTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 539
            K  NP VFF +   G+P GRI+MELF+++ P+TAENFRALCTGEKG G       +K S FHRV+P F+CQ            +SIYG KF DENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KHVVFG V  GMD V+ IE  GS  G  ++ + I +CGQL
Sbjct: 2889 KDTNPVVFFDVCADGEPLGRIIMELFSNIVPQTAENFRALCTGEKGFG-------FKNSIFHRVVPDFICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQL 3053          
BLAST of CF834279 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 5.937e-47
Identity = 95/184 (51.63%), Postives = 123/184 (66.85%), Query Frame = 3
Query:    6 LSHKGPKMP-----NPKVFFPLTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 539
            +S+ G  +P     NP VFF + +GG+P GR+ +ELFADVTPRTAENFR  CTGE    + G+P  YKGS FHRVI  FM Q             +IYG+ KF+DENF  +H  PG+LSMAN+GP TNG QFF+ T  T +L+GKHVVFGQV+ GMD+V+ IE   ++  + N+ VVI  CG++
Sbjct:    1 MSNTGSAVPQTTSSNPIVFFDVALGGEPLGRLKLELFADVTPRTAENFRQFCTGESK-NQQGRPQGYKGSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFSDENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVIDGMDIVRMIENTRTTRDKPNQDVVIIQCGEM 183          
BLAST of CF834279 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.754e-47
Identity = 91/146 (62.33%), Postives = 105/146 (71.92%), Query Frame = 3
Query:   39 KVFFPLTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIE 476
            KV+F + +GG+ AGRIVM LF +V P+T ENFRALCTGEK  G       YKGSSFHR+I  FM Q             SIYG+KF DENF  KHTGPGILSMANAGP TNGSQFF+CT KT WLD KHVVFGQV++GM +V+ +E
Sbjct:   96 KVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYG-------YKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLE 234          
BLAST of CF834279 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.013e-46
Identity = 94/172 (54.65%), Postives = 110/172 (63.95%), Query Frame = 3
Query:   24 KMPNPKVFFPLTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 539
            K  NP VFF +    +P GRI MELF+++ P+TAENFRALCTGEKG G       +K S FHRVIP F+CQ             SIYG KF DENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KHVVFG V  GMD VK IE  GS  G  ++ ++I +CGQ+
Sbjct:  921 KETNPVVFFDICADDEPLGRITMELFSNIVPKTAENFRALCTGEKGFG-------FKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQI 1085          
BLAST of CF834279 vs. ExPASy Swiss-Prot
Match: PPIH_ASPFU (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus fumigatus GN=cyp3 PE=3 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.013e-46
Identity = 98/178 (55.06%), Postives = 116/178 (65.17%), Query Frame = 3
Query:   12 HKGPKM-PNPKVFFPLTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 539
            H GP    NP VFF + +GG P GRI MELFADVTPRTAENFR  CTGE      GKP  YK S FHRVI  FM Q             +IYG+ KFADENFV KH   G+LSMAN+GP TNG QFF+ T  T +L+GKHVVFGQVV GMD+V+ IE   +   + ++ V+I  CG++
Sbjct:    5 HSGPATNTNPIVFFDIALGGVPLGRIKMELFADVTPRTAENFRRFCTGESK-NSQGKPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFADENFVLKHDRAGVLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVVDGMDIVRMIENTRTIRDKPSQDVIITQCGEM 181          
The following BLAST results are available for this feature:
BLAST of CF834279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
PPID_DEBHA1.082e-4855.11Peptidyl-prolyl cis-trans isomerase D OS=Debaryomy... [more]
CYPH_YEAST1.413e-4856.29Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
CYP40_ARATH2.410e-4856.65Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
PPID_YARLI5.370e-4855.23Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]
CYP11_RHIOR9.159e-4857.80Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizo... [more]
RBP2_MOUSE4.546e-4754.65E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
PPIH_EMENI5.937e-4751.63Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]
CP20C_ARATH7.754e-4762.33Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
RBP2_BOVIN1.013e-4654.65E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
PPIH_ASPFU1.013e-4655.06Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834279 ID=CF834279; Name=CF834279; organism=Citrus sinensis; type=EST; length=629bp
TTTTTCTCTCCCATAAAGGACCAAAAATGCCAAACCCCAAAGTGTTCTTC
CCCTTGACCGTCGGCGGTCAACCCGCCGGCAGGATCGTGATGGAGCTCTT
CGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCGCGCCCTCTGCACCG
GCGAGAAAGGCATCGGCAAGTCCGGCAAGCCACTCCACTACAAGGGCTCG
TCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGACTTCAC
CGCCGGAAACGGAACCGGAGGCGAATCAATCTACGGCTCAAAATTCGCCG
ATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCG
AATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAA
GACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCAAAG
GAATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGG
ACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATTGTCTTAGATTTG
ATCATGATAATGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGAT
GGTGATTATGTTATCTATTATTATGTGGC
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