CF834280

Overview
NameCF834280
Unique NameCF834280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834280 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 2.425e-51
Identity = 102/174 (58.62%), Postives = 122/174 (70.11%), Query Frame = -3
Query:  216 SKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 734
            S   NP+VFFD+ +GG+  GRIV+ELFAD+ P+TAENFRALCTGEKGIG + GKPLH+KG  FHR+I  FM Q           GESIYG KF DENF  KH   G+LSMANAG  TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + +E V     +  K  VIA+CG+L
Sbjct:   11 SNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184          
BLAST of CF834280 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.402e-51
Identity = 101/163 (61.96%), Postives = 113/163 (69.33%), Query Frame = -3
Query:  222 FFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 710
            FFD+   GQP GRIV +LF DV P+TA NFRALCTGEKG G       Y GS+FHRVIP FM Q           G+SIYG KF DENF  KH  PG+LSMANAGP TNGSQFF+ T  T WLDGKHVVFG+V EGMDVVK +E +GS+SG T   +VI  CG
Sbjct:    5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYG-------YAGSTFHRVIPQFMLQGGDFTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCG 160          
BLAST of CF834280 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.215e-51
Identity = 107/178 (60.11%), Postives = 126/178 (70.79%), Query Frame = -3
Query:  216 QSKMPNPKVFFDMTVG---GQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 737
            QSK+ + KV+FD++VG   G+ AGRIV+ L+ D  P+T ENFRALCTGEKG G       YKGS+FHRVI  FM Q           G+S+YG  F DENF   H GPG+LSMANAGP TNGSQFF+CT KT WLDG+HVVFGQV+EGM+VVK IE+  +  G R  K VVIADCGQL
Sbjct:   85 QSKITH-KVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFG-------YKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254          
BLAST of CF834280 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.572e-50
Identity = 100/176 (56.82%), Postives = 121/176 (68.75%), Query Frame = -3
Query:  216 INQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 743
            I +++  NP+VFFD+ +GG  AGRIVM L ADV P+TAENFR LCT E+G G       YKG SFHRVIP FMCQ           G+SIYG KF DENF  KH   G LSMAN+G  TNGSQFF+CT KT+WLD KHVVFG V+ G +VV+ +E+ GS SG  ++ +VI  CG+L
Sbjct:  131 IEKAEKRNPQVFFDIRIGGNDAGRIVMLLRADVVPKTAENFRQLCTHEQGYG-------YKGCSFHRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGEL 299          
BLAST of CF834280 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.572e-50
Identity = 100/173 (57.80%), Postives = 119/173 (68.79%), Query Frame = -3
Query:  213 PKVFFDMTVGGQPAGRIVMEL----FADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 719
            P+V+FD+ +G Q AGRI +EL    F DV P+TAENFRALCTGEKG+GK  KPL YKGS FHRVI  FM Q           GESIYG KF DENF  KH  P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVFG+V+ G  +V+ IE + + + +    V I DCG+LS
Sbjct:    8 PRVYFDIQIGSQKAGRIALELVRLPFNDVVPKTAENFRALCTGEKGVGKQRKPLSYKGSIFHRVIKQFMIQGGDFTNFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGELS 180          
BLAST of CF834280 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.573e-50
Identity = 101/175 (57.71%), Postives = 118/175 (67.43%), Query Frame = -3
Query:  216 NQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 740
            N +     KVFFD  V G   GRI  EL+ +V P+TAENFRALCTGEKG G       YKG  FHR+IP FM Q           G+SIYGSKFADENFVKKH   G+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +GMD+VKAIE  G++SG+    +VI + G+L
Sbjct:   15 NSASRLGKKVFFDPAVNGTKIGRIEFELYDNVVPKTAENFRALCTGEKGWG-------YKGVPFHRIIPDFMIQGGDTDLTNGFGGKSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGEL 182          
BLAST of CF834280 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.019e-49
Identity = 96/169 (56.80%), Postives = 119/169 (70.41%), Query Frame = -3
Query:  213 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 719
            P+VFFD+ +G +  GRI +EL   + P+TAENFRALCTGEKG+GK GKPLH+KGS FHRVI  FM Q           GESIYG KF DENF  KH  P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVFG+V+ G  VV+ +E + + + +  K V I +CG+L+
Sbjct:    8 PRVFFDIQIGNEKTGRIALELV--LVPKTAENFRALCTGEKGMGKQGKPLHFKGSIFHRVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNTQADKPVKDVTIVECGELT 174          
BLAST of CF834280 vs. ExPASy Swiss-Prot
Match: PPIH_NEUCR (Peptidyl-prolyl cis-trans isomerase H OS=Neurospora crassa GN=cyp-3 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.331e-49
Identity = 101/173 (58.38%), Postives = 118/173 (68.21%), Query Frame = -3
Query:  216 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSK-FADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 722
            NP VFFD+T+GG+P GRI  ELF DV PRTAENFR  CTGE      G+P  YKGS FHR+IP FMCQ              IYG+K FADENF+ KH  PG+LSMANAGP TNGSQFF+ T  T +LDGKHVVFG+VV+GMDVVK +E   +     + P   VVIA CG++
Sbjct:   11 NPLVFFDITLGGEPLGRITFELFKDVVPRTAENFRQFCTGESK-NNLGRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIYGTKSFADENFLLKHDTPGLLSMANAGPNTNGSQFFITTVPTPFLDGKHVVFGKVVDGMDVVKKMENTKTGYRGKDVPNLDVVIAQCGEM 182          
BLAST of CF834280 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.331e-49
Identity = 103/168 (61.31%), Postives = 116/168 (69.05%), Query Frame = -3
Query:  216 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 716
            KVFF +  G  P GR+V EL+ D+ P+TAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI  FM Q           GESIYG  F DENF+ KH   G LSMANAG  TNGSQFF+ TA+T  L+G H VFG+VVEG D+VK +E   +  S R     VI DCGQL
Sbjct:    8 KVFFQIKQGNTPLGRVVFELYNDIVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKAACVIEDCGQL 174          
BLAST of CF834280 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.331e-49
Identity = 96/167 (57.49%), Postives = 115/167 (68.86%), Query Frame = -3
Query:  216 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 716
            +V+FD+   GQP GR+V +L+ D+ P+TAENFRALCTGEKG G       Y GS FHRVIP FM Q           G+SIYG KF DENF K H  PG+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+VV+G D+VK +E +GS SG T   +V+A  G+L
Sbjct:    3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162          
The following BLAST results are available for this feature:
BLAST of CF834280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
PPID_HUMAN2.425e-5158.6240 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
CYPH_SCHPO5.402e-5161.96Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
CP20B_ARATH9.215e-5160.11Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIE_DROME1.572e-5056.82Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
PPID_ASPFU1.572e-5057.80Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
CYPC_YEAST4.573e-5057.71Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPID_ASPOR1.019e-4956.80Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIH_NEUCR1.331e-4958.38Peptidyl-prolyl cis-trans isomerase H OS=Neurospor... [more]
PPID_DICDI1.331e-4961.31Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
CYPH_YEAST1.331e-4957.49Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834280 ID=CF834280; Name=CF834280; organism=Citrus sinensis; type=EST; length=745bp
AAAAAGGCAGCTCATAGAAAGACAACCCTAATAGGTCATCAAGAACCACC
ACCGGAGACCCGATCCCCCTTGAACAAGTAACATAGCAGGAAAATTAGAT
AAAGATTAAAAGTCCTACAGACACGGCCACATAATAATAGATAACATAAT
CACCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTATCA
TGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCTTGT
TGGTCCTTCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACGTCC
ATTCCTTCGACGACTTGACCGAACACAACGTGCTTCCCATCGAGCCACTC
GGTCTTGGCCGTACAGACGAAGAACTGAGATCCGTTGGTTCCGGGTCCGG
CATTCGCCATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAGTTC
TCATCGGCGAATTTTGAGCCGTAGATTGATTCGCCTCCGGTTCCGTTTCC
GGCGGTGAAGTCTCCCCCCTGGCACATGAATCCGGGGATCACACGGTGGA
AGGACGAGCCCTTGTAGTGGAGTGGCTTGCCGGACTTGCCGATGCCTTTC
TCGCCGGTGCAGAGGGCGCGGAAGTTCTCGGCGGTTCGGGGGGTGACATC
GGCGAAGAGCTCCATCACGATCCTGCCGGCGGGCTGACCGCCGACGGTCA
TGTCGAAGAACACTTTGGGGTTTGGCATTTTTGATTGGTTGATTG
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