CF834304

Overview
NameCF834304
Unique NameCF834304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.778e-52
Identity = 101/149 (67.79%), Postives = 115/149 (77.18%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH   R WLK+NVS  VA  TRIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  100 RHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 2.778e-52
Identity = 101/149 (67.79%), Postives = 115/149 (77.18%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH   R WLK+NVS  VA  TRIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  100 RHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.629e-52
Identity = 101/149 (67.79%), Postives = 115/149 (77.18%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH   R WLK+NVS  VA  TRIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  100 RHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.629e-52
Identity = 101/149 (67.79%), Postives = 115/149 (77.18%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH   R WLK+NVS  VA  TRIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  100 RHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_HUMAN (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.629e-52
Identity = 101/149 (67.79%), Postives = 115/149 (77.18%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH   R WLK+NVS  VA  TRIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  100 RHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 3.629e-52
Identity = 101/149 (67.79%), Postives = 115/149 (77.18%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH   R WLK+NVS  VA  TRIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  100 RHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.739e-52
Identity = 102/156 (65.38%), Postives = 120/156 (76.92%), Query Frame = -1
Query:  263 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 730
            R ++ E ++F+G K AYALS+GL VIAC+GE L++REAG T +V   Q KA AD I SWDNVV+AYEPVWAIGTGKVA+P QAQEVHA  R W  +NVSAEV+  TRIIYGGSV+GSNC EL  Q D+DGFLVGGASLK PEF  I+ +   KK A
Sbjct:   41 RALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLK-PEFIDIIKAAEVKKSA 195          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 204.527 bits (519), Expect = 4.739e-52
Identity = 100/153 (65.36%), Postives = 118/153 (77.12%), Query Frame = -1
Query:  272 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 730
            R ++GE  +F+G+K AYAL++GL VIAC+GE L++REAG T +V  +Q KA A  I  W N V+AYEPVWAIGTGKVATP QAQEVHA  RDWLK NVS EVA  TRIIYGGSV G++C ELA Q D+DGFLVGGASLK PEF  I+N+   K
Sbjct:  100 RSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLK-PEFIDIINAAAVK 251          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.189e-52
Identity = 101/156 (64.74%), Postives = 118/156 (75.64%), Query Frame = -1
Query:  263 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 730
            R ++GE ++F+G K AYALS+GL VIAC+GE L+ERE+G T DV   Q KA AD +  W NVV+AYEPVWAIGTGKVA+P QAQEVHA  R WL  NVS EVA  TRIIYGGSVNG+NC EL  Q D+DGFLVGGASLK PEF  I+ +   K+ A
Sbjct:  100 RALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLK-PEFIDIIKAAEVKRNA 254          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.056e-51
Identity = 100/149 (67.11%), Postives = 114/149 (76.51%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K   D +  W  VV+AYEPVWAIGTGK ATP+QAQEVH   R WLK+NVS  VA  TRIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  100 RHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVITDNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
The following BLAST results are available for this feature:
BLAST of CF834304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MACMU2.778e-5267.79Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA2.778e-5267.79Triosephosphate isomerase OS=Macaca fascicularis G... [more]
TPIS_PONAB3.629e-5267.79Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR3.629e-5267.79Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]
TPIS_HUMAN3.629e-5267.79Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]
TPIS_CANFA3.629e-5267.79Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPIS_LACSA4.739e-5265.38Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_HORVU4.739e-5265.36Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_PETHY6.189e-5264.74Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_GORGO1.056e-5167.11Triosephosphate isomerase OS=Gorilla gorilla goril... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834304 ID=CF834304; Name=CF834304; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTATCGGTGCCATCAACATAACTGTATATTGTCCTTC
TGTCCGGTATCAAACAAGTTCAGCCCACCATAGAGACCCATAAGGAATCT
CCGATTGTTTGGGGAAGGAGAAACAAATAAATAAACTATCAAAACTTTCA
TTGAACATATCAAGGGCATAGGCTGGTTACACTAATTAGCTTTAAACTGA
TATAAATTCTCTTACCCCATTATTATTGGTTGATCTTGACAGAACAGGTT
TATACATCAACCAGCTACTTTCTTGGATGTTACGGAATTGACAATGGTAG
CAAACTCTGGGCCCTTCAAGGAAGCGCCACCAACCAAAAAACCATCAATA
TCCTCTTGTTTTGCAAGTTCAGCACAATTGCTTCCATTTACTGACCCTCC
ATAGATAATACGTGTTTTAGTGGCAACTTCTGCTGAGACATTGTTTTTAA
GCCAATCACGAAAAGCAGCATGTACTTCCTGAGCCTGCTCGGGGGTGGCC
ACTTTACCAGTTCCAATAGCCCATACAGGCTCATATGCAATGACTACATT
ATCCCAACTGGGTATAGCATCTGCATATGCTTTAAGTTGCTGAAAACAGA
CATCAAAAGTTTTTCCTGCTTCTCTCTCTTGCAACTGTTCCCCGATACAA
GCTATTACACCAAGTCCCTCGCTCAAGGCATAGGCAGCTTTCTTCCCTAT
AAACTGATCATCTTCACCAATAACATGTCT
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