CF834304

Overview
NameCF834304
Unique NameCF834304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.056e-51
Identity = 101/156 (64.74%), Postives = 116/156 (74.36%), Query Frame = -1
Query:  263 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 730
            R ++ E  +F+G K AYAL++GL VIAC+GE L+EREAG T DV   Q KA AD + +W NVVIAYEPVWAIGTGKVA+P QAQEVH   R WL  NVSA+VA  TRIIYGGSVNG NC EL  Q D+DGFLVGGASLK PEF  I+ +   KK A
Sbjct:  100 RAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLK-PEFIDIIKAAEVKKSA 254          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 1.379e-51
Identity = 100/149 (67.11%), Postives = 114/149 (76.51%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH   R WLK+NVS  VA   RIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  100 RHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSARIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.352e-51
Identity = 101/149 (67.79%), Postives = 114/149 (76.51%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K A+ALSEG+GVIACIGE+L +REAG T  V F+Q KA AD +  W  VV+AYEPVWAIGTGK ATPEQAQEVH   R+W+K NVS  VA   RIIYGGSV G  C ELA Q DIDGFLVGGASLK PEF  I+N+
Sbjct:   99 RHVFGECDELIGQKVAHALSEGIGVIACIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWVKTNVSEGVAQSVRIIYGGSVTGGTCRELAGQPDIDGFLVGGASLK-PEFIEIINA 246          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 2.352e-51
Identity = 99/149 (66.44%), Postives = 115/149 (77.18%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K ++AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH   R WLK+NV+  VA  TRIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  100 RHVFGESDELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 5.240e-51
Identity = 101/149 (67.79%), Postives = 114/149 (76.51%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RH+ GE D+ IG+K  +ALSEGLGVIACIGE+L EREAG T  V F+Q KA AD +  W  VV+AYEPVWAIGTGK ATP+QAQEVH   R WLK NVS  VA  TRIIYGGSV G+ C ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  100 RHIFGESDELIGQKVNHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKCNVSEGVAQCTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINA 247          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.843e-51
Identity = 99/149 (66.44%), Postives = 112/149 (75.17%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K A+ALSE +GVI CIGE+L +REAG T  V F+Q KA AD +  W  VV+AYEPVWAIGTGK ATPEQAQEVH   R+WLK NVS +VA   RIIYGGSV G  C EL  Q DIDGFLVGGASLK PEF  I+N+
Sbjct:   99 RHVFGESDELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWLKTNVSEDVAKSVRIIYGGSVTGGTCKELGAQPDIDGFLVGGASLK-PEFIDIINA 246          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 8.938e-51
Identity = 101/149 (67.79%), Postives = 114/149 (76.51%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R + GE D+ I  K A+AL+EGL VIACIGE LQEREAG+T  VCF+Q KA AD +  W NVVIAYEPVWAIGTGK A+PEQAQEVHAA R W   NVSA+V+   RI YGGSV  +NC ELA + DIDGFLVGGASLK PEF  IVN+
Sbjct:   98 RAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDGFLVGGASLK-PEFIQIVNA 245          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.991e-50
Identity = 98/149 (65.77%), Postives = 111/149 (74.50%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K A+ L   LGVIACIGE+L+EREAG T DV F+Q K  AD +  W  VV+AYEPVWAIGTGK A+PEQAQEVH   R WL+ NVS  VA   RIIYGGSV G NC ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:   99 RHVFGESDELIGQKVAHCLESDLGVIACIGEKLEEREAGTTEDVVFEQTKVIADNVKDWTRVVLAYEPVWAIGTGKTASPEQAQEVHEKLRGWLRANVSDAVADSVRIIYGGSVTGGNCKELAAQADVDGFLVGGASLK-PEFVDIINA 246          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.566e-50
Identity = 98/149 (65.77%), Postives = 110/149 (73.83%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K A+AL  GLGVIACIGE+L EREAG T  V F Q K  AD +  W  VV+AYEPVWAIGTGK A+P+QAQEVH   R WLK NVS  VA   RIIYGGSV G  C ELA Q+D+DGFLVGGASLK PEF  I+N+
Sbjct:   99 RHVFGESDELIGQKVAHALENGLGVIACIGEKLDEREAGITEKVVFAQTKFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDGFLVGGASLK-PEFIDIINA 246          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 196.438 bits (498), Expect = 1.291e-49
Identity = 97/149 (65.10%), Postives = 112/149 (75.17%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W+ VV+AYEPVWAIGTGK ATP+QAQEVH   R WLK +V   VA  TRIIYGGSV G+ C ELA Q D+DGF V GASLK PEF  I+N+
Sbjct:  100 RHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGSVTGATCKELASQPDVDGFRVSGASLK-PEFVDIINA 247          
The following BLAST results are available for this feature:
BLAST of CF834304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ARATH1.056e-5164.74Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_BOVIN1.379e-5167.11Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_XENLA2.352e-5167.79Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPIS_MOUSE2.352e-5166.44Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_RAT5.240e-5167.79Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPIS_XENTR6.843e-5166.44Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_CULTA8.938e-5167.79Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPISA_DANRE1.991e-5065.77Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPISB_DANRE7.566e-5065.77Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_PIG1.291e-4965.10Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05E20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834304 ID=CF834304; Name=CF834304; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTATCGGTGCCATCAACATAACTGTATATTGTCCTTC
TGTCCGGTATCAAACAAGTTCAGCCCACCATAGAGACCCATAAGGAATCT
CCGATTGTTTGGGGAAGGAGAAACAAATAAATAAACTATCAAAACTTTCA
TTGAACATATCAAGGGCATAGGCTGGTTACACTAATTAGCTTTAAACTGA
TATAAATTCTCTTACCCCATTATTATTGGTTGATCTTGACAGAACAGGTT
TATACATCAACCAGCTACTTTCTTGGATGTTACGGAATTGACAATGGTAG
CAAACTCTGGGCCCTTCAAGGAAGCGCCACCAACCAAAAAACCATCAATA
TCCTCTTGTTTTGCAAGTTCAGCACAATTGCTTCCATTTACTGACCCTCC
ATAGATAATACGTGTTTTAGTGGCAACTTCTGCTGAGACATTGTTTTTAA
GCCAATCACGAAAAGCAGCATGTACTTCCTGAGCCTGCTCGGGGGTGGCC
ACTTTACCAGTTCCAATAGCCCATACAGGCTCATATGCAATGACTACATT
ATCCCAACTGGGTATAGCATCTGCATATGCTTTAAGTTGCTGAAAACAGA
CATCAAAAGTTTTTCCTGCTTCTCTCTCTTGCAACTGTTCCCCGATACAA
GCTATTACACCAAGTCCCTCGCTCAAGGCATAGGCAGCTTTCTTCCCTAT
AAACTGATCATCTTCACCAATAACATGTCT
back to top