CF834304

Overview
NameCF834304
Unique NameCF834304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.755e-49
Identity = 96/153 (62.75%), Postives = 114/153 (74.51%), Query Frame = -1
Query:  272 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 730
            R ++ E ++F+G K AYALS+GL VIAC+GE L++REAG T  V   Q KA A+ +  W N+V+AYEPVWAIGTGKVA+P QAQEVH   R W+K NV A+VA   RIIYGGSVNG+N  ELA Q DIDGFLVGGASLK PEF  I+ S T K
Sbjct:  100 RALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLK-PEFVDIIKSATVK 251          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 94/149 (63.09%), Postives = 112/149 (75.17%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RHV GE+D+ IG+K A+AL   L VIACIGE+L+EREAG T DV F Q +  A+ +  W+ VV+AYEPVWAIGTGK ATPEQAQEVH   R W + N+S EV+   RIIYGGSV  +NC ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:   99 RHVFGENDELIGQKVAHALESDLSVIACIGEKLEEREAGTTEDVIFAQTQVIAENVMDWEKVVLAYEPVWAIGTGKTATPEQAQEVHEKLRAWFRANISEEVSDSLRIIYGGSVTAANCRELASQTDVDGFLVGGASLK-PEFIDIINA 246          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.093e-48
Identity = 95/152 (62.50%), Postives = 112/152 (73.68%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS---WDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RH+ GE ++ IG+K  +AL  GL VI CIGE L EREAGKT DVCF Q+ A A  +PS   WD VVIAYEPVWAIGTGK ATP QAQEVH   RDW++ +V A +A K RI+YGGSV  SN  +L  Q D+DGFLVGGASLK P+F TI+N+
Sbjct:   98 RHIFGESNELIGEKVKHALDSGLNVIPCIGELLSEREAGKTNDVCFAQMDAIAKNVPSKEAWDKVVIAYEPVWAIGTGKTATPAQAQEVHKVVRDWIRKHVDAGIADKVRILYGGSVTASNAKDLGTQPDVDGFLVGGASLK-PDFITIINA 248          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.179e-48
Identity = 96/149 (64.43%), Postives = 113/149 (75.84%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R + GE D  I +KA +AL+EGL VIACIGE L+EREAGKT +V  +Q+ AYA  I  W NVV+AYEPVWAIGTGK ATP+QAQEVHA  R WL +N+S EV+   RI YGGSV  +N  ELAK+ DIDGFLVGGASLK PEF  I+N+
Sbjct:   98 RAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLK-PEFVDIINA 245          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.179e-48
Identity = 96/149 (64.43%), Postives = 113/149 (75.84%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R + GE D  I +KA +AL+EGL VIACIGE L+EREAGKT +V  +Q+ AYA  I  W NVV+AYEPVWAIGTGK ATP+QAQEVHA  R WL +N+S EV+   RI YGGSV  +N  ELAK+ DIDGFLVGGASLK PEF  I+N+
Sbjct:   98 RAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLK-PEFVDIINA 245          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 9.249e-48
Identity = 95/149 (63.76%), Postives = 113/149 (75.84%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R + GE D  I +KA +AL+EGL VIACIGE L+EREAGKT +V  +Q+ AYA  I  W NVV+AYEPVWAIGTG+ ATP+QAQEVHA  R WL +N+S EV+   RI YGGSV  +N  ELAK+ DIDGFLVGGASLK PEF  I+N+
Sbjct:   98 RAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLK-PEFVDIINA 245          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.691e-47
Identity = 91/143 (63.64%), Postives = 108/143 (75.52%), Query Frame = -1
Query:  302 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEF 730
            RHV GE D+ IG+K ++ALSEGLGV+ACIGE+L EREAG T  V F+  +  AD +  W  VV+AYEPVWAIGTGK A+P+Q+QE+H   R WLK NVS  VA   RIIYGGSV G+ C ELA + D+DGFLVGGASLK PEF
Sbjct:   98 RHVFGESDELIGQKVSHALSEGLGVVACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDGFLVGGASLK-PEF 239          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.336e-46
Identity = 98/152 (64.47%), Postives = 116/152 (76.32%), Query Frame = -1
Query:  284 RHV--IGEDDQFIGKKAAYALSEG-LGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            RH+  + E D  I  KAAYAL    LGVI CIGE L+ERE+G+T  VC +QL+A +DAI  W +VVIAYEPVWAIGTGKVATPEQA++VH A R WL NNVS +VA  TRI+YGGSV+ +NC  LAKQ +IDGFLVGGAS+K P F  IV+S
Sbjct:   91 RHIAQLKESDHTIAMKAAYALQHASLGVIYCIGELLEERESGQTIAVCERQLQALSDAISDWSDVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAWLANNVSPQVAASTRILYGGSVSPANCESLAKQPNIDGFLVGGASMK-PTFLEIVDS 241          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.744e-46
Identity = 93/149 (62.42%), Postives = 108/149 (72.48%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R+ +GE D+FI  K  YAL  G+ VI C GE    R+AG+T      QL A A  I  W NVVIAYEP+WAIGTG VAT EQAQEVHAA R WLK NVS +VA +TRI+YGGSVN  NC +LAK++DIDGFLVGGASLK PEF  I+N+
Sbjct:   99 RNELGESDEFIASKTKYALDNGISVIWCCGESKDTRQAGETIKFVENQLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLK-PEFVDIINA 246          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 184.496 bits (467), Expect = 5.075e-46
Identity = 91/148 (61.49%), Postives = 105/148 (70.95%), Query Frame = -1
Query:  287 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 730
            R +  E D+F+  K  +AL +GL V+ACIGE L EREA +T +V  +QL A AD + +W  +VIAYEPVWAIGTGK ATPEQAQEVHA  R W  N + A VA   R+IYGGSVNG NC E  K  DIDGFLVGGASLK PEF  IVN
Sbjct:   99 RTIFKESDEFVADKTKFALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLK-PEFHNIVN 245          
The following BLAST results are available for this feature:
BLAST of CF834304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_COPJA3.755e-4962.75Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ORYLA8.365e-4963.09Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]
TPIS_TAESO1.093e-4862.50Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_DROYA3.179e-4864.43Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]
TPIS_DROSI3.179e-4864.43Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPIS_DROME9.249e-4863.76Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_LATCH2.691e-4763.64Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_GRAVE1.336e-4664.47Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_NEUCR1.744e-4662.42Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_SCHPO5.075e-4661.49Triosephosphate isomerase OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834304 ID=CF834304; Name=CF834304; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTATCGGTGCCATCAACATAACTGTATATTGTCCTTC
TGTCCGGTATCAAACAAGTTCAGCCCACCATAGAGACCCATAAGGAATCT
CCGATTGTTTGGGGAAGGAGAAACAAATAAATAAACTATCAAAACTTTCA
TTGAACATATCAAGGGCATAGGCTGGTTACACTAATTAGCTTTAAACTGA
TATAAATTCTCTTACCCCATTATTATTGGTTGATCTTGACAGAACAGGTT
TATACATCAACCAGCTACTTTCTTGGATGTTACGGAATTGACAATGGTAG
CAAACTCTGGGCCCTTCAAGGAAGCGCCACCAACCAAAAAACCATCAATA
TCCTCTTGTTTTGCAAGTTCAGCACAATTGCTTCCATTTACTGACCCTCC
ATAGATAATACGTGTTTTAGTGGCAACTTCTGCTGAGACATTGTTTTTAA
GCCAATCACGAAAAGCAGCATGTACTTCCTGAGCCTGCTCGGGGGTGGCC
ACTTTACCAGTTCCAATAGCCCATACAGGCTCATATGCAATGACTACATT
ATCCCAACTGGGTATAGCATCTGCATATGCTTTAAGTTGCTGAAAACAGA
CATCAAAAGTTTTTCCTGCTTCTCTCTCTTGCAACTGTTCCCCGATACAA
GCTATTACACCAAGTCCCTCGCTCAAGGCATAGGCAGCTTTCTTCCCTAT
AAACTGATCATCTTCACCAATAACATGTCT
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