CF834304

Overview
NameCF834304
Unique NameCF834304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_MESSB (Triosephosphate isomerase OS=Mesorhizobium sp. (strain BNC1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.756e-22
Identity = 64/148 (43.24%), Postives = 80/148 (54.05%), Query Frame = -1
Query:  272 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 715
            E D+ +  KA  A   GL  I CIGE   +REAG+T  V  +Q+        +  N VIAYEPVWAIGTG   T E   + HA  R  L   +  E A   R++YGGSV  SN  EL    ++DG L+GGASLK  +F  I  +V  K
Sbjct:  108 EADEDVAAKAEAAWRAGLTAIICIGETKIQREAGETLSVLSRQIAGSVPPGATAKNSVIAYEPVWAIGTGLTPTVEDVAQAHAHLRAELGMKLGIE-ADGMRLLYGGSVKPSNAGELLSILNVDGALIGGASLKAADFLAISAAVKGK 254          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_STRTD (Triosephosphate isomerase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.294e-22
Identity = 62/152 (40.79%), Postives = 84/152 (55.26%), Query Frame = -1
Query:  281 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 730
            R    E D+ I KKA    + G+  I C GE L+  EAGK  +    Q+ A    +      + VIAYEP+WAIGTGK A+ + AQ++    RD +  +   EVA K R++YGGSV   N AE     D+DG LVGGASL+   F  +++ V
Sbjct:  100 RDYFHETDEDINKKAKAIFANGMIPIICCGESLETYEAGKAAEFVGAQVSAALAGLTPEQVASSVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVLYGGSVKPENVAEYMACPDVDGALVGGASLEPESFLALLDFV 251          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_STRT2 (Triosephosphate isomerase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=tpiA PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.294e-22
Identity = 62/152 (40.79%), Postives = 84/152 (55.26%), Query Frame = -1
Query:  281 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 730
            R    E D+ I KKA    + G+  I C GE L+  EAGK  +    Q+ A    +      + VIAYEP+WAIGTGK A+ + AQ++    RD +  +   EVA K R++YGGSV   N AE     D+DG LVGGASL+   F  +++ V
Sbjct:  100 RDYFHETDEDINKKAKAIFANGMIPIICCGESLETYEAGKAAEFVGAQVSAALAGLTPEQVASSVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVLYGGSVKPENVAEYMACPDVDGALVGGASLEPESFLALLDFV 251          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_STRT1 (Triosephosphate isomerase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.294e-22
Identity = 62/152 (40.79%), Postives = 84/152 (55.26%), Query Frame = -1
Query:  281 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 730
            R    E D+ I KKA    + G+  I C GE L+  EAGK  +    Q+ A    +      + VIAYEP+WAIGTGK A+ + AQ++    RD +  +   EVA K R++YGGSV   N AE     D+DG LVGGASL+   F  +++ V
Sbjct:  100 RDYFHETDEDINKKAKAIFANGMIPIICCGESLETYEAGKAAEFVGAQVSAALAGLTPEQVASSVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVLYGGSVKPENVAEYMACPDVDGALVGGASLEPESFLALLDFV 251          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGA (Triosephosphate isomerase OS=Mycoplasma gallisepticum GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.294e-22
Identity = 64/151 (42.38%), Postives = 86/151 (56.95%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R +  E D+ I +K    L   +  I CIGE L+E EA KT  V   QL+     I S    +++IAYEPVWAIGTGK A+ + AQ+  A  R  L    S  +A +  I+YGGSV   N +EL  Q+DI+G LVGGASL   +F  ++ +
Sbjct:  101 RKLFHESDELINQKVKTLLENKMRPILCIGETLEEYEANKTKAVLKDQLEKDLKGIDSSLLKDLIIAYEPVWAIGTGKTASSQTAQDAIAYIRTVLGLLSSKTIANELPILYGGSVTPDNVSELLAQKDINGALVGGASLDPHKFIQLIEA 251          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS1_BRUSU (Triosephosphate isomerase 1 OS=Brucella suis GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.294e-22
Identity = 61/141 (43.26%), Postives = 78/141 (55.32%), Query Frame = -1
Query:  293 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 715
            E ++ I  K   A + GL  I C+GE   ER+A +  DV   QL        + +N +IAYEPVWAIGTG   T +  +  HA  R+ L     A+ A   R++YGGSV  SN AEL    D+DG LVGGASLK  +F  I
Sbjct:  108 ESNKLICAKTEAAWAAGLVAIVCVGETASERKAERALDVIGDQLSGSLPDGVTAENTIIAYEPVWAIGTGLTPTVQDVRAAHAFMREQLIERFGAKGA-HLRLLYGGSVKPSNAAELLGVADVDGALVGGASLKAADFLAI 247          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS1_BRUAB (Triosephosphate isomerase 1 OS=Brucella abortus GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.294e-22
Identity = 61/141 (43.26%), Postives = 78/141 (55.32%), Query Frame = -1
Query:  293 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 715
            E ++ I  K   A + GL  I C+GE   ER+A +  DV   QL        + +N +IAYEPVWAIGTG   T +  +  HA  R+ L     A+ A   R++YGGSV  SN AEL    D+DG LVGGASLK  +F  I
Sbjct:  108 ESNKLICAKTEAAWAAGLVAIVCVGETASERKAERALDVIGDQLSGSLPDGVTAENTIIAYEPVWAIGTGLTPTVQDVRAAHAFMREQLIERFGAKGA-HLRLLYGGSVKPSNAAELLGVADVDGALVGGASLKAADFLAI 247          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_BACSK (Triosephosphate isomerase OS=Bacillus clausii (strain KSM-K16) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.996e-22
Identity = 64/151 (42.38%), Postives = 79/151 (52.32%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R +  E D+ + KK   A +  L  I C GE  +EREAGK   V  +Q++     +        VIAYEP+WAIGTGK AT + A E  A  R  +  N S E A   RI YGGSV   N  +   Q DIDG LVGGASL    F  +V +
Sbjct:   99 REMFAETDETVNKKVHAAFAHHLVPIMCCGETAEEREAGKMEAVVKEQVENGLAGLSEEQVKQTVIAYEPIWAIGTGKSATEKDANEACAYVRQTVAANFSEEAAEAIRIQYGGSVKPGNIKDYMAQPDIDGALVGGASLDADSFLELVGA 249          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS1_BRUME (Triosephosphate isomerase 1 OS=Brucella melitensis GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.996e-22
Identity = 60/141 (42.55%), Postives = 78/141 (55.32%), Query Frame = -1
Query:  293 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 715
            E ++ I  K   A + GL  I C+GE   ER+A +  DV   QL        + +N +IAYEP+WAIGTG   T +  +  HA  R+ L     A+ A   R++YGGSV  SN AEL    D+DG LVGGASLK  +F  I
Sbjct:  108 ESNKLICAKTEAAWAAGLVAIVCVGETASERKAERALDVIGDQLSGSLPDGVTAENTIIAYEPIWAIGTGLTPTVQDVRAAHAFMREQLIERFGAKGA-HLRLLYGGSVKPSNAAELLGVADVDGALVGGASLKAADFLAI 247          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_CLOK5 (Triosephosphate isomerase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.913e-22
Identity = 64/150 (42.67%), Postives = 79/150 (52.67%), Query Frame = -1
Query:  287 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 730
            R    E D+ I KK   A    +  I C GE L ERE G T +V  +Q+K     +     + +VIAYEP+WAIGTGK AT +QA +  A  R  +        A   RI YGGSV  +      +Q  IDG LVGGASLK  +FA IVN
Sbjct:   98 RQYFNEKDETINKKIKKAFEHDIIPIVCCGESLLERENGITEEVLGRQIKLALKDLRKEQVEKIVIAYEPIWAIGTGKTATDKQANDTIAHIRGVVSKMYGENAAEVVRIQYGGSVKPATIKAQMEQPHIDGALVGGASLKPQDFAAIVN 247          
The following BLAST results are available for this feature:
BLAST of CF834304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MESSB1.756e-2243.24Triosephosphate isomerase OS=Mesorhizobium sp. (st... [more]
TPIS_STRTD2.294e-2240.79Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_STRT22.294e-2240.79Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_STRT12.294e-2240.79Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_MYCGA2.294e-2242.38Triosephosphate isomerase OS=Mycoplasma gallisepti... [more]
TPIS1_BRUSU2.294e-2243.26Triosephosphate isomerase 1 OS=Brucella suis GN=tp... [more]
TPIS1_BRUAB2.294e-2243.26Triosephosphate isomerase 1 OS=Brucella abortus GN... [more]
TPIS_BACSK2.996e-2242.38Triosephosphate isomerase OS=Bacillus clausii (str... [more]
TPIS1_BRUME2.996e-2242.55Triosephosphate isomerase 1 OS=Brucella melitensis... [more]
TPIS_CLOK53.913e-2242.67Triosephosphate isomerase OS=Clostridium kluyveri ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834304 ID=CF834304; Name=CF834304; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTATCGGTGCCATCAACATAACTGTATATTGTCCTTC
TGTCCGGTATCAAACAAGTTCAGCCCACCATAGAGACCCATAAGGAATCT
CCGATTGTTTGGGGAAGGAGAAACAAATAAATAAACTATCAAAACTTTCA
TTGAACATATCAAGGGCATAGGCTGGTTACACTAATTAGCTTTAAACTGA
TATAAATTCTCTTACCCCATTATTATTGGTTGATCTTGACAGAACAGGTT
TATACATCAACCAGCTACTTTCTTGGATGTTACGGAATTGACAATGGTAG
CAAACTCTGGGCCCTTCAAGGAAGCGCCACCAACCAAAAAACCATCAATA
TCCTCTTGTTTTGCAAGTTCAGCACAATTGCTTCCATTTACTGACCCTCC
ATAGATAATACGTGTTTTAGTGGCAACTTCTGCTGAGACATTGTTTTTAA
GCCAATCACGAAAAGCAGCATGTACTTCCTGAGCCTGCTCGGGGGTGGCC
ACTTTACCAGTTCCAATAGCCCATACAGGCTCATATGCAATGACTACATT
ATCCCAACTGGGTATAGCATCTGCATATGCTTTAAGTTGCTGAAAACAGA
CATCAAAAGTTTTTCCTGCTTCTCTCTCTTGCAACTGTTCCCCGATACAA
GCTATTACACCAAGTCCCTCGCTCAAGGCATAGGCAGCTTTCTTCCCTAT
AAACTGATCATCTTCACCAATAACATGTCT
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