CF834304

Overview
NameCF834304
Unique NameCF834304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.807e-42
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R    EDD+FI  K  +AL +G+GVI CIGE L+E++AGKT DV  +QL A  + +  W NVV+AYEPVWAIGTG  ATPE AQ++HA+ R +L + +  + A++ RI+YGGS NGSN      + D+DGFLVGGASLK PEF  I+NS
Sbjct:   99 RSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLK-PEFVDIINS 246          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.584e-42
Identity = 82/127 (64.57%), Postives = 95/127 (74.80%), Query Frame = -1
Query:  350 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQED 730
            R + GE D+ I  K A+AL+EGL VIACIGE LQEREAG+T  VCF+Q KA AD +  W NVV+AYEPVWAIGTGK ATPEQAQEVH A R W  +NVSA+V+   RI YGGSV  +NC ELA + D
Sbjct:   80 RAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVVAYEPVWAIGTGKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.764e-41
Identity = 83/127 (65.35%), Postives = 94/127 (74.02%), Query Frame = -1
Query:  350 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQED 730
            R + GE D+ I +K A+AL EGL VIACIGE LQEREAG+T  VCF+Q KA A  +  W NVVIAYEPVWAIGTGK ATPEQAQEVHAA R W   NVSA+V+   RI YGGSV  +NC ELA + D
Sbjct:   80 RAIFGETDELIAEKVAHALGEGLKVIACIGETLQEREAGQTEAVCFRQTKAIAAQVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSNAIRIQYGGSVTAANCRELAGKPD 206          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_CANAL (Triosephosphate isomerase OS=Candida albicans GN=TPI1 PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 8.385e-41
Identity = 81/149 (54.36%), Postives = 102/149 (68.46%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R +I E D+FI +K  +AL  G+ VI CIGE L+ER+ G T DVC +QL A +  +  W N+V+AYEPVWAIGTG  ATPE A+E H   R  L  ++ AE A KTRI+YGGSVNG N  +   + ++DGFLVGGASLK PEF  I+ S
Sbjct:   99 RTIIKESDEFIAEKTKFALDTGVKVILCIGETLEERKGGVTLDVCARQLDAVSKIVSDWSNIVVAYEPVWAIGTGLAATPEDAEETHKGIRAHLAKSIGAEQAEKTRILYGGSVNGKNAKDFKDKANVDGFLVGGASLK-PEFVDIIKS 246          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.095e-40
Identity = 82/127 (64.57%), Postives = 93/127 (73.23%), Query Frame = -1
Query:  350 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQED 730
            R + GE  + I  K  +AL+EGL VIACIGE LQEREA KT  VCF+Q KA AD +  W NVVIAYEPVWAIGTGK ATPEQAQEVHAA R W   NVSA+V++  RI YGGSV  +NC ELA + D
Sbjct:   80 RAIFGESGELIADKIVHALAEGLKVIACIGETLQEREAAKTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.430e-40
Identity = 82/155 (52.90%), Postives = 102/155 (65.81%), Query Frame = -1
Query:  269 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS-WDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 730
            R+V  E  + I KK  YA+S GL VI C+GE L +R++  T  +  +QLK +A   P  W  +VIAYEPVWAIGTG VATP++AQ+ H   R W+   VS +VA KT I+YGGSVN  NC  L+KQ DIDGFLVGGASL   +F  I+ S   KK
Sbjct:  102 RNVFSESSELITKKTKYAISLGLTVILCLGELLADRKSNNTEHILSEQLKDFASFTPEEWSKIVIAYEPVWAIGTGAVATPQEAQDTHVFIRKWISEKVSEDVAKKTSIMYGGSVNADNCHNLSKQSDIDGFLVGGASLVASDFIAIIKSAVPKK 256          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.098e-40
Identity = 81/149 (54.36%), Postives = 101/149 (67.79%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R    EDD+ + +K A+AL  G+ VI CIGE L E++AG T DV  +QL    + +  W NVVIAYEPVWAIGTG  AT E AQ++HAA RD+L    S +VA   RI++GGS NG+N A    + D+DGFLVGGASLK PEF  I+NS
Sbjct:   99 RTYFNEDDEQVAEKTAFALERGVSVILCIGETLDEKKAGVTLDVVKRQLTPVLEKVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHAAIRDFLAERTSRDVADAVRILFGGSANGANAASFRDKADVDGFLVGGASLK-PEFVDIINS 246          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPISL_HUMAN (Putative triosephosphate isomerase-like protein LOC286016 OS=Homo sapiens PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 9.270e-40
Identity = 81/136 (59.56%), Postives = 97/136 (71.32%), Query Frame = -1
Query:  284 KAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 691
            K A+AL+E LGVIACIGE+L EREAG T  V F+Q K  AD +  W  V++AY+PVWA GTGK ATP+QAQEVH   R WLK+N+S  VA  T IIYGGSV  + C ELA Q D+  FL+ G SLK PEF  I+N+
Sbjct:   94 KVAHALAERLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVILAYDPVWATGTGKTATPQQAQEVHKKLRGWLKSNISDAVAQSTGIIYGGSVTKATCKELASQPDVAAFLMSGVSLK-PEFVDIINA 228          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.697e-39
Identity = 83/151 (54.97%), Postives = 104/151 (68.87%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R   GE ++ +  K A A++ G  VIACIGE LQERE+G+T  V   Q+ A A  +    W  VVIAYEPVWAIGTGKVATP+QAQE HA  R W+ + + A+VA + RI+YGGSVNG N   L +Q D++GFLVGGASLK PEF  I+ +
Sbjct:   99 RAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLK-PEFVDIIKA 248          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.697e-39
Identity = 83/151 (54.97%), Postives = 104/151 (68.87%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R   GE D+ + +K + A  +G  VIACIGE LQ+REA +T  V   Q  A A  +   +W+ VV+AYEPVWAIGTGKVATPEQAQEVH   R W+  N+  +VA K RI+YGGSVN +N A L  + DI+GFLVGGASLK PEF  I+++
Sbjct:  100 RTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLK-PEFRDIIDA 249          
The following BLAST results are available for this feature:
BLAST of CF834304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_YEAST5.807e-4255.03Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_AEDTO7.584e-4264.57Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_ANOME3.764e-4165.35Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_CANAL8.385e-4154.36Triosephosphate isomerase OS=Candida albicans GN=T... [more]
TPIS_CULPI1.095e-4064.57Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_DICDI1.430e-4052.90Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_ASHGO7.098e-4054.36Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPISL_HUMAN9.270e-4059.56Putative triosephosphate isomerase-like protein LO... [more]
TPIS_TRYBB2.697e-3954.97Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_LEIME2.697e-3954.97Triosephosphate isomerase OS=Leishmania mexicana P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834304 ID=CF834304; Name=CF834304; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTATCGGTGCCATCAACATAACTGTATATTGTCCTTC
TGTCCGGTATCAAACAAGTTCAGCCCACCATAGAGACCCATAAGGAATCT
CCGATTGTTTGGGGAAGGAGAAACAAATAAATAAACTATCAAAACTTTCA
TTGAACATATCAAGGGCATAGGCTGGTTACACTAATTAGCTTTAAACTGA
TATAAATTCTCTTACCCCATTATTATTGGTTGATCTTGACAGAACAGGTT
TATACATCAACCAGCTACTTTCTTGGATGTTACGGAATTGACAATGGTAG
CAAACTCTGGGCCCTTCAAGGAAGCGCCACCAACCAAAAAACCATCAATA
TCCTCTTGTTTTGCAAGTTCAGCACAATTGCTTCCATTTACTGACCCTCC
ATAGATAATACGTGTTTTAGTGGCAACTTCTGCTGAGACATTGTTTTTAA
GCCAATCACGAAAAGCAGCATGTACTTCCTGAGCCTGCTCGGGGGTGGCC
ACTTTACCAGTTCCAATAGCCCATACAGGCTCATATGCAATGACTACATT
ATCCCAACTGGGTATAGCATCTGCATATGCTTTAAGTTGCTGAAAACAGA
CATCAAAAGTTTTTCCTGCTTCTCTCTCTTGCAACTGTTCCCCGATACAA
GCTATTACACCAAGTCCCTCGCTCAAGGCATAGGCAGCTTTCTTCCCTAT
AAACTGATCATCTTCACCAATAACATGTCT
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