CF834304

Overview
NameCF834304
Unique NameCF834304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.601e-39
Identity = 85/151 (56.29%), Postives = 103/151 (68.21%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R +  E  + +  K   AL  GL VI CIGE L+ERE G+T  VC +QL A    +    W N+VIAYEPVWAIGTGKVAT  QAQE H   R +L   VS +VA++TR+IYGGSVN +N  +LA Q+DIDGFLVGGASLK PEF  I+N+
Sbjct:   99 RTLFHETSEVVALKTRAALDNGLKVILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEEDWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGSVNAANSKDLASQQDIDGFLVGGASLK-PEFVDIINA 248          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.848e-39
Identity = 78/144 (54.17%), Postives = 99/144 (68.75%), Query Frame = -1
Query:  284 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 715
            EDD+ + +K  +AL +GLGVI CIGE L+E++AG T  V  +QL A    +  W NVVIAYEPVWAIGTG  AT E AQ++H + R +L   +  + A KTRI+YGGS NG+N      + D+DGFLVGGASLK PEF  I+NS
Sbjct:  104 EDDKIVAEKTKFALDQGLGVILCIGETLEEKKAGVTLKVVERQLDAVIAEVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHHSIRSYLAEKLGKDTAEKTRILYGGSANGANAGTFKDKADVDGFLVGGASLK-PEFVDIINS 246          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.848e-39
Identity = 84/158 (53.16%), Postives = 105/158 (66.46%), Query Frame = -1
Query:  269 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS----WDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 730
            R ++GE D+   KKA  AL +G+ VI C+GE L ER+A +T +V   QL+A    +      W  VVIAYEPVW+IGTG VATPEQA+EVH   R W    V AE A   RIIYGGS NGSNC +L +  +IDGFLVGGASLK PEF T+++ +T  +
Sbjct:  100 RRIMGETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLK-PEFMTMIDILTKTR 256          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.982e-38
Identity = 84/152 (55.26%), Postives = 102/152 (67.11%), Query Frame = -1
Query:  287 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS----WDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 730
            R ++GE ++   KKA  AL +G+ VI C GE L ER+A  T +V   QL+A    I      W+NVVIAYEPVW+IGTG VATPEQA+EVH   R W    V AE A   RIIYGGS NGSNC +L +  +IDGFLVGGASLK PEF T+++
Sbjct:  100 RRIMGETNEQSAKKAKRALDKGMTVIFCTGETLDERKANNTMEVNIAQLEALKKEIGESKKLWENVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLK-PEFTTMID 250          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.480e-37
Identity = 82/149 (55.03%), Postives = 97/149 (65.10%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R +  E  ++I  K  YAL  GL VI CIGE + E++AGKT DV   QL      I  W NVVIAYEPVWAIGTG  AT E AQ++H   R +LK+ + A+ A K RIIYGGSVNG N      + D+DGFLVGGASLK PEF  I+NS
Sbjct:   99 RTINKESSEWIADKTKYALDNGLDVILCIGETIDEKKAGKTLDVVRSQLDPVIAKIKDWSNVVIAYEPVWAIGTGLAATAEDAQQIHHEIRAYLKDKIGAQ-ADKVRIIYGGSVNGKNSGTFKDKSDVDGFLVGGASLK-PEFVDIINS 245          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.306e-37
Identity = 75/144 (52.08%), Postives = 97/144 (67.36%), Query Frame = -1
Query:  284 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 715
            E D+FI  K  +AL  G+ VI CIGE L+E++ G T +V  +QL+A  D +  W NVV+AYEPVWAIGTG  AT + AQ +H + R++L   +S + A K RI+YGGS NG N      + D+DGFLVGGASLK PEF  I+NS
Sbjct:  104 ETDEFIADKTKFALDSGVKVILCIGETLEEKQKGITLEVVQRQLQAVLDKVQDWTNVVVAYEPVWAIGTGLAATSDDAQAIHHSIREFLAKKLSKDTAEKIRILYGGSANGKNAVTFKDKADVDGFLVGGASLK-PEFVDIINS 246          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.137e-36
Identity = 76/130 (58.46%), Postives = 94/130 (72.31%), Query Frame = -1
Query:  344 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS-WDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDID 730
            R + GE D  + +K A+AL  GL VIACIGE L+EREAGKT +V F+Q KA   AI + W NVV+AYEPVWAIGTGK A+P+QAQ+VHA+ R+WL +N S +VA   RI YGGSV  +N  EL+   DID
Sbjct:   86 RTIFGEKDDLVAEKVAHALENGLKVIACIGETLEEREAGKTEEVVFRQTKALLPAIGNNWANVVLAYEPVWAIGTGKTASPQQAQDVHASLRNWLSSNASPDVAASVRIQYGGSVTAANAKELSAFPDID 215          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.646e-36
Identity = 76/147 (51.70%), Postives = 99/147 (67.35%), Query Frame = -1
Query:  284 GEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 718
            GE ++ + +K A A + G  VI C+GE  +EREAG+T  V   QL A A  +   +W  VVIAYEPVWAIGTGKVATP+QAQEVH   R W+++ +  ++A + RI+YGGSV   N   L +  DI+GFLVGGASLK PEF  I+ +
Sbjct:  104 GETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLK-PEFVEIIEA 249          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.761e-36
Identity = 73/149 (48.99%), Postives = 97/149 (65.10%), Query Frame = -1
Query:  284 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 730
            R    E D+ + +K  +AL  G+ VI CIGE L+E++   T  V  +QL+A  + +  W NVV+AYEPVWAIGTG  AT E AQ++H + R++L   +S +VA   RI+YGGS NG N      + D+DGFLVGGASLK PEF  I+NS
Sbjct:   99 RTYFNETDEIVAEKTKFALDSGVKVILCIGETLEEKQQNITLQVVQRQLQAVLEKVQDWTNVVVAYEPVWAIGTGLAATAEDAQDIHHSIREFLAEKLSRDVADSVRILYGGSANGKNAVTFKDKADVDGFLVGGASLK-PEFVDIINS 246          
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPG (Triosephosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.086e-35
Identity = 80/148 (54.05%), Postives = 101/148 (68.24%), Query Frame = -1
Query:  293 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 730
            R VIGE D+ + +K A A ++GL  + CIGE L+EREAGKT +V  +QL +  +A  + ++ N VIAYEPVWAIGTG  ATP+QAQ+VHAA R  L     AEVA K +++YGGSV  +N AEL    DIDG L+GGASL   EF  I
Sbjct:   99 RQVIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAE-DAEVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAI 245          
The following BLAST results are available for this feature:
BLAST of CF834304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_COPC74.601e-3956.29Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_CANGA7.848e-3954.17Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPI1_GIALA7.848e-3953.16Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPI2_GIALA2.982e-3855.26Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPIS_YARLI1.480e-3755.03Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPIS_KLUMA4.306e-3752.08Triosephosphate isomerase OS=Kluyveromyces marxian... [more]
TPIS_HELVI2.137e-3658.46Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_TRYCR3.646e-3651.70Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_KLULA4.761e-3648.99Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_PSEPG3.086e-3554.05Triosephosphate isomerase OS=Pseudomonas putida (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834304 ID=CF834304; Name=CF834304; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTATCGGTGCCATCAACATAACTGTATATTGTCCTTC
TGTCCGGTATCAAACAAGTTCAGCCCACCATAGAGACCCATAAGGAATCT
CCGATTGTTTGGGGAAGGAGAAACAAATAAATAAACTATCAAAACTTTCA
TTGAACATATCAAGGGCATAGGCTGGTTACACTAATTAGCTTTAAACTGA
TATAAATTCTCTTACCCCATTATTATTGGTTGATCTTGACAGAACAGGTT
TATACATCAACCAGCTACTTTCTTGGATGTTACGGAATTGACAATGGTAG
CAAACTCTGGGCCCTTCAAGGAAGCGCCACCAACCAAAAAACCATCAATA
TCCTCTTGTTTTGCAAGTTCAGCACAATTGCTTCCATTTACTGACCCTCC
ATAGATAATACGTGTTTTAGTGGCAACTTCTGCTGAGACATTGTTTTTAA
GCCAATCACGAAAAGCAGCATGTACTTCCTGAGCCTGCTCGGGGGTGGCC
ACTTTACCAGTTCCAATAGCCCATACAGGCTCATATGCAATGACTACATT
ATCCCAACTGGGTATAGCATCTGCATATGCTTTAAGTTGCTGAAAACAGA
CATCAAAAGTTTTTCCTGCTTCTCTCTCTTGCAACTGTTCCCCGATACAA
GCTATTACACCAAGTCCCTCGCTCAAGGCATAGGCAGCTTTCTTCCCTAT
AAACTGATCATCTTCACCAATAACATGTCT
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