CF834304

Overview
NameCF834304
Unique NameCF834304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLI (Triosephosphate isomerase OS=Escherichia coli (strain K12) GN=tpiA PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = -1 
Query:  263 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 715
            E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH   RD +   V A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLC (Triosephosphate isomerase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = -1 
Query:  263 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 715
            E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH   RD +   V A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL6 (Triosephosphate isomerase OS=Escherichia coli O6 GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = -1 
Query:  263 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 715
            E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH   RD +   V A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL5 (Triosephosphate isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = -1 
Query:  263 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 715
            E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH   RD +   V A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ECOK1 (Triosephosphate isomerase OS=Escherichia coli O1:K1 / APEC GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = -1 
Query:  263 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 715
            E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH   RD +   V A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ECOHS (Triosephosphate isomerase OS=Escherichia coli O9:H4 (strain HS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = -1 
Query:  263 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 715
            E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH   RD +   V A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ECODH (Triosephosphate isomerase OS=Escherichia coli (strain K12 / DH10B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = -1 
Query:  263 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 715
            E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH   RD +   V A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ECO8A (Triosephosphate isomerase OS=Escherichia coli O8 (strain IAI1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = -1 
Query:  263 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 715
            E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH   RD +   V A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ECO7I (Triosephosphate isomerase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = -1 
Query:  263 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 715
            E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH   RD +   V A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of CF834304 vs. ExPASy Swiss-Prot
Match: TPIS_ECO5E (Triosephosphate isomerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = -1 
Query:  263 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAFRDWLKNNVSAEVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 715
            E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A        +++  VIAYEPVWAIGTGK ATP QAQ VH   RD +   V A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
The following BLAST results are available for this feature:
BLAST of CF834304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ECOLI1.098e-3252.29Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOLC1.098e-3252.29Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOL61.098e-3252.29Triosephosphate isomerase OS=Escherichia coli O6 G... [more]
TPIS_ECOL51.098e-3252.29Triosephosphate isomerase OS=Escherichia coli O6:K... [more]
TPIS_ECOK11.098e-3252.29Triosephosphate isomerase OS=Escherichia coli O1:K... [more]
TPIS_ECOHS1.098e-3252.29Triosephosphate isomerase OS=Escherichia coli O9:H... [more]
TPIS_ECODH1.098e-3252.29Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECO8A1.098e-3252.29Triosephosphate isomerase OS=Escherichia coli O8 (... [more]
TPIS_ECO7I1.098e-3252.29Triosephosphate isomerase OS=Escherichia coli O7:K... [more]
TPIS_ECO5E1.098e-3252.29Triosephosphate isomerase OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834304 ID=CF834304; Name=CF834304; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTATCGGTGCCATCAACATAACTGTATATTGTCCTTC
TGTCCGGTATCAAACAAGTTCAGCCCACCATAGAGACCCATAAGGAATCT
CCGATTGTTTGGGGAAGGAGAAACAAATAAATAAACTATCAAAACTTTCA
TTGAACATATCAAGGGCATAGGCTGGTTACACTAATTAGCTTTAAACTGA
TATAAATTCTCTTACCCCATTATTATTGGTTGATCTTGACAGAACAGGTT
TATACATCAACCAGCTACTTTCTTGGATGTTACGGAATTGACAATGGTAG
CAAACTCTGGGCCCTTCAAGGAAGCGCCACCAACCAAAAAACCATCAATA
TCCTCTTGTTTTGCAAGTTCAGCACAATTGCTTCCATTTACTGACCCTCC
ATAGATAATACGTGTTTTAGTGGCAACTTCTGCTGAGACATTGTTTTTAA
GCCAATCACGAAAAGCAGCATGTACTTCCTGAGCCTGCTCGGGGGTGGCC
ACTTTACCAGTTCCAATAGCCCATACAGGCTCATATGCAATGACTACATT
ATCCCAACTGGGTATAGCATCTGCATATGCTTTAAGTTGCTGAAAACAGA
CATCAAAAGTTTTTCCTGCTTCTCTCTCTTGCAACTGTTCCCCGATACAA
GCTATTACACCAAGTCCCTCGCTCAAGGCATAGGCAGCTTTCTTCCCTAT
AAACTGATCATCTTCACCAATAACATGTCT
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