CF834357

Overview
NameCF834357
Unique NameCF834357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834357 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.027e-24
Identity = 63/157 (40.13%), Postives = 85/157 (54.14%), Query Frame = -1
Query:  302 NPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFE 772
            NP  +Y+T GPE+W+   G I   V+             +LKE NP +K   VEPV S +L+GG+P  HK +GIG  FIP  +D +  DE   ++ E A    K  A KEGLL+G SSG         AK+  +AG  IV VFP   +RY+S  ++E
Sbjct:  150 NPSTYYKTLGPEMWEALDGNIHTFVAGAGSGGTFAGTASFLKEKNPAVKTVIVEPVGS-ILNGGEPHAHKTEGIGMEFIPDYMDKSHFDEIYTVTDENAFRLVKEAAEKEGLLIGSSSGAALYAALEEAKK-ASAGTNIVTVFPDSSDRYISKQIYE 304          
BLAST of CF834357 vs. ExPASy Swiss-Prot
Match: CYSM_BACSU (Probable cysteine synthase OS=Bacillus subtilis GN=ytkP PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.939e-22
Identity = 67/163 (41.10%), Postives = 93/163 (57.06%), Query Frame = -1
Query:  296 ANPKIHYETTGPEIWKGT---GGKIDALVSXXXXXXXXXXXGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESV 775
            ANP  H +TT PEI +     G  + A V+           G+ LKE  P+I ++ VEP  S VLSGGKPG HK+ G   GFIP +L+ ++ DE ++IS E+A  T + LA +EG+LVG SSG         AKR  +  K++V +    GERYLS+ L+  +
Sbjct:  150 ANPDAHRKTTAPEIARAIEEIGKPLGAFVASSGTGGTITGTGEALKELFPDITVHVVEPAGSPVLSGGKPGAHKLVGTSPGFIPPILNEDVYDEIIKISDEDAYTTTRRLAAEEGILVGPSSGAACFAAIETAKR-LSPDKVVVCMTADTGERYLSTDLWSFI 311          
BLAST of CF834357 vs. ExPASy Swiss-Prot
Match: CYSM_HELPJ (Cysteine synthase OS=Helicobacter pylori J99 GN=cysM PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.623e-22
Identity = 62/157 (39.49%), Postives = 83/157 (52.87%), Query Frame = -1
Query:  305 NPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKR-PENAGKLIVVVFPSFGERYLSSVLF 772
            NP  +Y T  PEI +  G  + + V+            KYLKE  P I+L GVEP E ++L+GG+PGPH+I+GIG  FIP       +D    IS EE     + LA K GLLVG SSG          +R PE  G  ++ +FP   +RYLS  ++
Sbjct:  151 NPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFAGMAKYLKERIPNIRLIGVEP-EGSILNGGEPGPHEIEGIGVEFIPPFFANLDIDRFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFAAALKEVQRLPE--GSQVLTIFPDMADRYLSKGIY 304          
BLAST of CF834357 vs. ExPASy Swiss-Prot
Match: CYSM_HELPY (Cysteine synthase OS=Helicobacter pylori GN=cysM PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.144e-21
Identity = 62/157 (39.49%), Postives = 85/157 (54.14%), Query Frame = -1
Query:  305 NPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKR-PENAGKLIVVVFPSFGERYLSSVLF 772
            NP  +Y T  PEI +  G  + + V+            +YLKE  P I+L GVEP E ++L+GG+PGPH+I+GIG  FIP   +   +D    IS EE     + LA K GLLVG SSG         A+R PE  G  ++ +FP   +RYLS  ++
Sbjct:  152 NPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFAGTARYLKERIPAIRLIGVEP-EGSILNGGEPGPHEIEGIGVEFIPPFFENLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEAQRLPE--GSQVLTIFPDVADRYLSKGIY 305          
BLAST of CF834357 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.776e-21
Identity = 64/158 (40.51%), Postives = 91/158 (57.59%), Query Frame = -1
Query:  305 ANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKR-PENAGKLIVVVFPSFGERYLSSVLF 775
            +N   H + T  EI +    ++D  V+           G+ LKE   ++ + GVEP+ S +LS G+ G HKIQGIGA FIP +L+  ++DE + +S+E+AI TAK LA K GL+VGISSG         AK+ P+   K I+ +     ERYLS+ LF
Sbjct:  145 SNKNAHRKNTALEILRDLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQGIGANFIPAILNKEVIDEVITVSNEDAINTAKELA-KSGLMVGISSGANVFAASMLAKKFPD---KRILTMLNDTAERYLSTDLF 298          
BLAST of CF834357 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.896e-20
Identity = 51/157 (32.48%), Postives = 86/157 (54.78%), Query Frame = -1
Query:  302 NPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFE 772
            NP+ HY +TGPEIW+ TGG I   VS            +YLKE NP +++ G++P+E + + G +  P +       ++P + D + +D  V +  +EA +  + LA +EG+  G+SSG         ++  ENA  ++V +    G+RYLSS +++
Sbjct:  150 NPEAHYHSTGPEIWQQTGGSITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPMEGSAIPGIRRWPQE-------YLPKIYDASRVDRVVDMHQDEAEDIMRRLAREEGIFCGVSSGGAVAAMLRLSRELENA--VLVAIICDRGDRYLSSGVYD 297          
BLAST of CF834357 vs. ExPASy Swiss-Prot
Match: CYSK_FLAS3 (Cysteine synthase OS=Flavobacterium sp. (strain K3-15 / DSM ID92-509) GN=cysK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.176e-19
Identity = 51/116 (43.97%), Postives = 66/116 (56.90%), Query Frame = -1
Query:  428 ANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVG 775
            AN KIH ETT  EI +     +D +++            K LKE  P +K+  VEP  S VLSGG P PH +QG+GAGF+P +LD+ LLD  + +  +EA E A   A KEGL  G
Sbjct:  147 ANVKIHVETTAQEILQDFPEGLDYVITGVGTGGHITGIAKALKEKYPNLKVIAVEPELSPVLSGGSPAPHPLQGLGAGFVPSILDITLLDGVITVGKDEAYEYAINAAKKEGLFCG 262          
BLAST of CF834357 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.438e-17
Identity = 49/156 (31.41%), Postives = 83/156 (53.21%), Query Frame = -1
Query:  305 NPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLF 772
            NP  HY TTGPEIW+ TGG+I   VS            ++++E +  + + G++P E + + G +  P +       ++PG+ + +L+DE + I   +A  T + LA++EG+  G+SSG         AK   N   ++V +    G+RYLS+ +F
Sbjct:  146 NPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTE-------YLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAK--ANPDAVVVAIICDRGDRYLSTGVF 292          
BLAST of CF834357 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.203e-17
Identity = 49/156 (31.41%), Postives = 81/156 (51.92%), Query Frame = -1
Query:  305 NPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLF 772
            NP  HY TTGPEIW+ T G+I   VS            ++L+E    + + G++P E + + G +  P       A ++PG+ + +L+DE + I   +A  T + LA++EG+  G+SSG         A+     G ++V +    G+RYLS+ +F
Sbjct:  146 NPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVSRFLREQEKPVTIVGLQPEEGSSIPGIRRWP-------AEYMPGIFNASLVDEVLDIHQNDAENTMRELAVREGIFCGVSSGGAVAGALRVAR--ATPGAIVVAIICDRGDRYLSTGVF 292          
BLAST of CF834357 vs. ExPASy Swiss-Prot
Match: CYSM_AQUAE (Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.679e-15
Identity = 56/162 (34.57%), Postives = 81/162 (50.00%), Query Frame = -1
Query:  305 ANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQG---IGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGK--LIVVVFPSFGERYLSSVLF 775
            AN K H+ +TG EIW  T G+I   V+           G+ LK +NP I++ GV+P             H I+G   I +   PG+ D   LD T+ + +E+A   A+ LA K+ + VG SSG         A+     G+  +IV VFP  GE+YL++ LF
Sbjct:  171 ANWKAHFYSTGIEIWNQTKGRITHFVAGIGTGGTIMGTGRRLKIYNPNIQVIGVQPAYPF---------HGIEGLKHIESSIKPGIFDETFLDRTIFVETEDAYYWARELAKKDAIFVGQSSGAALWACIQLARELAKKGEKGVIVTVFPDGGEKYLTTALF 323          
The following BLAST results are available for this feature:
BLAST of CF834357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
MCCA_BACSU6.027e-2440.13O-acetylserine dependent cystathionine beta-syntha... [more]
CYSM_BACSU1.939e-2241.10Probable cysteine synthase OS=Bacillus subtilis GN... [more]
CYSM_HELPJ9.623e-2239.49Cysteine synthase OS=Helicobacter pylori J99 GN=cy... [more]
CYSM_HELPY2.144e-2139.49Cysteine synthase OS=Helicobacter pylori GN=cysM P... [more]
CYSM_CAMJE4.776e-2140.51Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CYSM_PSEAE6.896e-2032.48Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]
CYSK_FLAS31.176e-1943.97Cysteine synthase OS=Flavobacterium sp. (strain K3... [more]
CYSM_ECOLI1.438e-1731.41Cysteine synthase B OS=Escherichia coli (strain K1... [more]
CYSM_SALTY3.203e-1731.41Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]
CYSM_AQUAE6.679e-1534.57Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05G09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834357 ID=CF834357; Name=CF834357; organism=Citrus sinensis; type=EST; length=775bp
CTCTACAACACCTACTTCCAAACTTTCCTTAATCTCAAGCACAGCATAGA
CTACAGAACTTTAACCCCTATGAGTTTCCACAGATTTTTACACAAACAGT
GAAACCTCCTCCAGAGGGTAAGGAATTGCAAAGATTTGTAGTTGTTTATA
AGAAAACATGAAGAAGCCAAAGCATCCAACCAAAATGAAATTCTGACTAG
AAAAGCAAGTTAGTCCCCACAGAATACGGGACTGGTGACTCAAAAGGTTT
GGGCATATCTCACGGCTCAAACACCATGCTCTCTGCCTCCTTTTTCACAG
ATTCAAATAAAACAGAAGAGAGGTATCGCTCTCCGAAGCTGGGGAAGACC
ACCACAATGAGTTTTCCAGCATTTTCTGGCCTCTTTGCTATCCGAATTGC
AGCTGCAGTAGCAGCTCCGGATGATATCCCAACCAACAATCCTTCTTTAA
GTGCAAGAAGCTTCGCAGTCTCAATAGCTTCTTCACTTGATATTTGAACA
GTTTCATCTAGTAAATTGACGTCCAAAACTCCAGGGATGAAGCCAGCACC
TATTCCTTGGATCTTATGGGGACCAGGTTTCCCTCCAGACAGCACAGCAC
TTTCAACTGGTTCAACGCCATAGAGCTTAATTTCAGGATTATGCTCTTTG
AGATACTTCCCTGCACCAGTGACAGTACCACCAGTCCCTATACCAGAAAC
AAGGGCATCAATCTTACCACCGGTGCCTTTCCAGATCTCTGGTCCGGTAG
TCTCGTAGTGGATCTTTGGGTTTGC
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