CF834417

Overview
NameCF834417
Unique NameCF834417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8153 contig Csv1_Contig8153:1145..1991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834417 vs. ExPASy Swiss-Prot
Match: FLRT_CITMA (Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase OS=Citrus maxima GN=C12RT1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 50/148 (33.78%), Postives = 83/148 (56.08%), Query Frame = -1
Query:  305 LSWLDSKPSRXXXXXXXXXXXXXXSKQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTK--DRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSE 742
            + WL  K  R              + ++ ++AIGL  + V F+W  R   PD    + ++E  LP+GF +  +  ++G++V+ W PQ ++L H S+GGF++HCGW SV+EG+  GVP++  P+  EQ     VVV+   +G+ V R +
Sbjct:  250 MDWLSQKEPRSVVYASFGSEYFPSTDEIHDIAIGLLLTEVNFIWAFRLH-PDE---KMTIEEALPQGFAEEIERNNKGMIVQGWVPQAKILRHGSIGGFLSHCGWGSVVEGMVFGVPIIGVPMAYEQPSNAKVVVDN-GMGMVVPRDK 392          
BLAST of CF834417 vs. ExPASy Swiss-Prot
Match: UGAGT_ARATH (Anthocyanin 5-O-glucosyltransferase OS=Arabidopsis thaliana GN=UGT75C1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 59/164 (35.98%), Postives = 85/164 (51.83%), Query Frame = -1
Query:  248 WLDSKPSRXXXXXXXXXXXXXXS-KQLKEMAIGLERSGVKFLWVVRAPAPDSIENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIRAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELM 736
            WLDSK  R                K ++ +  G+  +   FLW+VR   P+  +    LE       L R  DRGLVV  W  Q  VL H +VG FVTHCGWNS LE + +GVP++A+P +A+Q     +V +  ++G+ V   EEGD  V   E+ + + ++M
Sbjct:  261 WLDSKLERSVIYISLGTHADDLPEKHMEALTHGVLATNRPFLWIVREKNPEEKKKNRFLE-------LIRGSDRGLVV-GWCSQTAVLAHCAVGCFVTHCGWNSTLESLESGVPVVAFPQFADQCTTAKLVEDTWRIGVKVKVGEEGD--VDGEEIRRCLEKVM 414          
The following BLAST results are available for this feature:
BLAST of CF834417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
FLRT_CITMA2.319e-1933.78Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltran... [more]
UGAGT_ARATH2.564e-1835.98Anthocyanin 5-O-glucosyltransferase OS=Arabidopsis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05H23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834417 ID=CF834417; Name=CF834417; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTTTTTTTTTGCCGAAATTATTAAAACGAAAAATATTGAACTTTA
AACAGCAATTTTATGCAACTTTTGTGCAAATTTCATTATTGTTTTGACTA
TCCAAACGGAGCTATGCATCCTCTTTTAAATGACTCAACCAAATTGTCCA
ATGCAACACGAGATGACCCACCATCCCTCATCGCTGCTGCAGCTGCTTCT
TTCATTGCCACCGCACGTTCCTTAACAGCTCTACCTTTCTCCGAGTCCAT
CAACTCACTAACTCGCTGCTCCAACTCGGCTGAGCTCACCAATCCGTCTC
CTTCTTCTGACCGAGTCACCGCCAAACCCACCTTCATTTCCTCCACCACG
ACCGCTCTAATCATCTTTTGCTCGGCATACAGAGGCCAAGCCAACATTGG
CACCCCGGCACAAACACCTTCAAGCACCGAGTTCCACCCGCAGTGAGTCA
CAAACCCGCCAACTGACTCATGATTCAGTACCTCCACTTGCGGCGCCCAC
GATTCAACCACGAGCCCCCTATCTTTTGTTCTATCCAAGAACCCTTCAGG
CAAAAGAGACTCCAATGAGCTTCGGTTCTCGATGCTGTCGGGAGCTGGAG
CTCTCACGACCCAAAGAAACTTAACACCACTTCTCTCCAACCCAATGGCC
ATTTCTTTTAACTGCTTACTGGAGAACGATCCCAAGCTTCCGAAACAAAG
AAACAGGACGCTTCGACTCGGTTTCGAGTCAAGCCAGCTCAAGCATTCAT
GTCGATCACGTCCTCGATTCTCTCCATTTCCTCGACCAACCACGGGCCCT
ATGCAATATAAAGGCGGCGACGTATCCCCTGGAGTGCATTGTCCTTC
back to top