CF834420

Overview
NameCF834420
Unique NameCF834420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8638 contig Csv1_Contig8638:439..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALAT1_MOUSE (Alanine aminotransferase 1 OS=Mus musculus GN=Gpt PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 8.968e-30
Identity = 61/135 (45.19%), Postives = 88/135 (65.19%), Query Frame = -1
Query:  235 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 639
            +V+P  P + S++QF  E + +L  L  +A++    FN    + CN  +GAMYSFPQI+LP KA++ A+  G  PD+F+CL LLE TGI  VPGSGFGQ+EG +H R TILP  E +  ++E  + F+ +F  +Y
Sbjct:  361 VVSPPTPSEPSFKQFQAERQEVLAELAAKAKLTEQVFNEAPGIRCNPVQGAMYSFPQIQLPLKAVQRAQDLGLAPDMFFCLCLLEETGICVVPGSGFGQQEGTYHFRMTILPPMEKLRVLLEKLRHFHAKFTHEY 495          
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALAT1_RAT (Alanine aminotransferase 1 OS=Rattus norvegicus GN=Gpt PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.530e-29
Identity = 60/135 (44.44%), Postives = 87/135 (64.44%), Query Frame = -1
Query:  235 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 639
            +V+P  P + S++QF  E + +L  L  +A++    FN    + CN  +GAMYSFPQ++LP KA++ A+  G  PD+F+CL LLE TGI  VPGSGFGQ+EG +H R TILP  E +  ++E    F+ +F  +Y
Sbjct:  361 VVSPPTPSEPSFKQFQAERQEVLAELAAKAKLTEQVFNEAPGIRCNPVQGAMYSFPQVQLPLKAVQRAQELGLAPDMFFCLCLLEETGICVVPGSGFGQQEGTYHFRMTILPPMEKLRLLLEKLSHFHAKFTHEY 495          
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALAT_YEAST (Probable alanine aminotransferase OS=Saccharomyces cerevisiae GN=ALT2 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.026e-25
Identity = 59/137 (43.07%), Postives = 83/137 (60.58%), Query Frame = -1
Query:  229 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED 639
            MV P +PGD SYEQ   E   I   +R RA ++ + F     + C   +GAMY FP++ LP KA+  ++R G  PD FYC  LLE+TGI TVPGSGFGQ+ G +H+RTT L         ++ +K+F+ +F  +Y +
Sbjct:  374 MVKPPQPGDESYEQDHDERLKIFHEMRTRANLLYETFKELEGIECQKPQGAMYLFPRLVLPKKALCESERLGIEPDEFYCTSLLESTGICTVPGSGFGQRPGTYHVRTTFLAPGTKW---IQDWKEFHQDFFSKYRN 507          
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALAM_YEAST (Probable alanine aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=ALT1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.750e-25
Identity = 64/137 (46.72%), Postives = 80/137 (58.39%), Query Frame = -1
Query:  229 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED 639
            MV P   G+ S+E    E   I E L  RA  + + FNS   + C   +GAMY FP+I LP KA++ A+     PD FYC +LLE+TGI TVPGSGFGQ+ G +HLRTT L    +     ESF K   EF +QY D
Sbjct:  459 MVRPPVEGEESFESDQAERNSIHEKLITRAMTLYETFNSLEGIECQKPQGAMYLFPKIDLPFKAVQEARHLELTPDEFYCKKLLESTGICTVPGSGFGQEPGTYHLRTTFLAPGLEWIKKWESFHK---EFFDQYRD 592          
BLAST of CF834420 vs. ExPASy Swiss-Prot
Match: ALAT_SCHPO (Putative alanine aminotransferase OS=Schizosaccharomyces pombe GN=SPBC582.08 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.638e-23
Identity = 59/136 (43.38%), Postives = 79/136 (58.09%), Query Frame = -1
Query:  232 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIFTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYE 639
            +VNP KPGD SY+ F++E   I E+LR + R + +G    + V C    GAMY  P + LP K I  AK     PD FY + LL+ +GI  VPGSGFGQ EG +H+R T L    +    +E F K ++E M+ YE
Sbjct:  373 LVNPPKPGDPSYDLFIKEVDEIHEALRLQCRQLYEGTKRMKRVSCLEPHGAMYLHPSVSLPEKLITTAKAQKIQPDEFYAIELLKRSGICVVPGSGFGQPEGDYHIRITFLAKGTE---YIERFVKAHNEIMDLYE 505          
The following BLAST results are available for this feature:
BLAST of CF834420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ALAT1_MOUSE8.968e-3045.19Alanine aminotransferase 1 OS=Mus musculus GN=Gpt ... [more]
ALAT1_RAT1.530e-2944.44Alanine aminotransferase 1 OS=Rattus norvegicus GN... [more]
ALAT_YEAST1.026e-2543.07Probable alanine aminotransferase OS=Saccharomyces... [more]
ALAM_YEAST1.750e-2546.72Probable alanine aminotransferase, mitochondrial O... [more]
ALAT_SCHPO1.638e-2343.38Putative alanine aminotransferase OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05H24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834420 ID=CF834420; Name=CF834420; organism=Citrus sinensis; type=EST; length=639bp
GTTTTTTTTTTCTTTTTTTCATAATTCATAGAGAATATTTATAAGGGATG
AAACAGGAATCAAACAGAGATAATATGGGCAATCTTCAAGCGACTGAAGT
TTTTCCTACTAAAAAGGGGTTAGGACGAAAGTAGGGAGCATATATCGATG
GCTTTCTATAGCCTTTGAATAATATAATACAAATTTTGGGAATTTGGACG
TCCCTTACATTCTTGAATAGCCCCTGTAGTCTTCATATTGCTCCATGAAC
TCATCATTGAACTTCTTGAAACTCTCCATGATTGCTGGCATGTCCTCCTC
AGCCGGTAAAATTGTTGTCCTTAAATGGAAGACCCCTTCTTTCTGTCCAA
ATCCAGAACCAGGGACAGTAAAAATGCCAGTGGCTTCCAAAAGCCGGAGA
CAGTAAAAAACATCAGGAACTTTTCCTGCCCTCTTAGCAGCCTCTATTGC
TTTTGGAGGTAGGCGTATTTGAGGGAATGAATACATGGCACCTTCCGTGA
AATTGCAAACCACATTTCTGCAACTGTTGAATCCATCAGTCATCATTCTT
GCTCTTCTCCTCAGTGATTCAAGGATCCCTTTACTTTCCCTAACAAACTG
TTCATATGAAATATCTCCAGGCTTGAGCGGGTTAACCAT
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