CF834423

Overview
NameCF834423
Unique NameCF834423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:354..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_SYNP6 (Elongation factor Tu OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tuf PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.767e-39
Identity = 77/113 (68.14%), Postives = 96/113 (84.96%), Query Frame = 2 
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            ++   VD YIP P+R+ D PFL+AVE VF+ITGRGTVATGR+ERG++KVG+T+++VGL++TR+ TVTGVEMFQKTL E +AGDNVGLLL G+Q  DI RGMVLA PG+ITP T
Sbjct:  201 KLMEEVDAYIPTPEREVDRPFLMAVEDVFTITGRGTVATGRIERGSVKVGETIEIVGLRDTRSTTVTGVEMFQKTLDEGLAGDNVGLLLRGIQKTDIERGMVLAKPGSITPHT 313
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_SYNP2 (Elongation factor Tu OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=tuf PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.767e-39
Identity = 78/109 (71.56%), Postives = 94/109 (86.24%), Query Frame = 2 
Query:   17 SVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            SVD Y+P+P+R  D PFL+AVE VFSITGRGTVATGR+ERG +KVG+T+++VG+++TR+ TVTGVEMFQKTL E MAGDNVG+LL GVQ  DI RGMVLA PG+ITP T
Sbjct:  205 SVDEYMPLPERDVDKPFLMAVEDVFSITGRGTVATGRIERGRVKVGETIEIVGIRDTRSTTVTGVEMFQKTLDEGMAGDNVGVLLRGVQKDDIERGMVLAKPGSITPHT 313
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJB (Elongation factor Tu OS=Synechococcus sp. GN=tuf PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.767e-39
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            YE+  +VD YIP P+R  D PFL+AVE VFSITGRGTVATGR+ERG IKVG+TV+LVGL+ETR+ TVTG+EMFQKTL E +AGDNVG+LL G+Q  ++ RGMVLA P TITP T
Sbjct:  200 YELMDAVDSYIPTPERDVDKPFLMAVEDVFSITGRGTVATGRIERGRIKVGETVELVGLRETRSTTVTGLEMFQKTLDEGIAGDNVGVLLRGIQKNEVERGMVLAKPKTITPHT 313
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJA (Elongation factor Tu OS=Synechococcus sp. (strain JA-3-3Ab) GN=tuf PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.767e-39
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            YE+  +VD YIP P+R  D PFL+AVE VFSITGRGTVATGR+ERG IKVG+TV+LVGL+ETR+ TVTG+EMFQKTL E +AGDNVG+LL G+Q  ++ RGMVLA P TITP T
Sbjct:  200 YELMDAVDSYIPTPERDVDKPFLMAVEDVFSITGRGTVATGRIERGRIKVGETVELVGLRETRSTTVTGLEMFQKTLDEGIAGDNVGVLLRGIQKNEVERGMVLAKPKTITPHT 313
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_SYNE7 (Elongation factor Tu OS=Synechococcus elongatus (strain PCC 7942) GN=tuf PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.767e-39
Identity = 77/113 (68.14%), Postives = 96/113 (84.96%), Query Frame = 2 
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            ++   VD YIP P+R+ D PFL+AVE VF+ITGRGTVATGR+ERG++KVG+T+++VGL++TR+ TVTGVEMFQKTL E +AGDNVGLLL G+Q  DI RGMVLA PG+ITP T
Sbjct:  201 KLMEEVDAYIPTPEREVDRPFLMAVEDVFTITGRGTVATGRIERGSVKVGETIEIVGLRDTRSTTVTGVEMFQKTLDEGLAGDNVGLLLRGIQKTDIERGMVLAKPGSITPHT 313
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_ANASP (Elongation factor Tu OS=Anabaena sp. (strain PCC 7120) GN=tuf PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.426e-39
Identity = 78/114 (68.42%), Postives = 94/114 (82.46%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            YE+  +VD YIP P+R  D PFL+AVE VFSITGRGTVATGR+ERG +KVG  V+LVG+++TRN TVTG+EMF+K+L E MAGDN G+LL G+Q ADI RGMVLA PG+ITP T
Sbjct:  200 YELMDAVDSYIPDPERDIDKPFLMAVEDVFSITGRGTVATGRIERGKVKVGDVVELVGIRDTRNTTVTGIEMFKKSLDEGMAGDNAGVLLRGIQKADIERGMVLAKPGSITPHT 313
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_GLOS1 (Elongation factor Tu (Fragment) OS=Gloeothece sp. (strain PCC 6501) GN=tufA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.393e-39
Identity = 79/113 (69.91%), Postives = 93/113 (82.30%), Query Frame = 2 
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            ++   VD YIP P+R+ D PFL+AVE VFSITGRGTVATGR+ERG IKVG+TV+LVG++ TR+ TVTGVEMFQK L E MAGDNVGLLL G+Q  DI RGMV+A PG+ITP T
Sbjct:  112 KLMDEVDEYIPTPEREIDKPFLMAVEDVFSITGRGTVATGRIERGKIKVGETVELVGIRNTRSTTVTGVEMFQKVLEEGMAGDNVGLLLRGIQKEDIERGMVIAKPGSITPHT 224
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_RHDSA (Elongation factor Tu, chloroplastic OS=Rhodomonas salina GN=tufA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.096e-38
Identity = 74/114 (64.91%), Postives = 95/114 (83.33%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            +E+   +D YIP P+R+TD  FL+AVE VFSITGRGTVATGR+ERG +KVG T++++GL+ETR  T+TG+EMFQK+L EA+AGDNVG+L+ G+Q  DI RGMVLA PG+ITP T
Sbjct:  200 FELMDKIDEYIPTPERETDKSFLMAVEDVFSITGRGTVATGRIERGQVKVGDTIEIIGLRETRTTTITGLEMFQKSLEEALAGDNVGILVRGIQKTDIERGMVLAAPGSITPHT 313
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_OLTVI (Elongation factor Tu, chloroplastic OS=Oltmannsiellopsis viridis GN=tufA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.096e-38
Identity = 79/114 (69.30%), Postives = 94/114 (82.46%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            Y +  +VD YIP P+R TD PFL+AVE VFSITGRGTVATGRVERG +K+G TV+LVGLK+T   TVTG+EMFQKTL E++AGDNVG+LL GVQ  +I RGMVLA PG+I+P T
Sbjct:  201 YSLMENVDSYIPTPERDTDKPFLMAVEDVFSITGRGTVATGRVERGVVKIGDTVELVGLKDTTETTVTGLEMFQKTLDESVAGDNVGILLRGVQKENIQRGMVLAKPGSISPHT 314
[Close]
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_PHOEC (Elongation factor Tu (Fragment) OS=Phormidium ectocarpi GN=tufA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.870e-38
Identity = 76/114 (66.67%), Postives = 93/114 (81.58%), Query Frame = 2 
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            +++   VD YIP P+R  D PFL+AVE VFSITGRGTVATGR+ERG +KVG+ +++VG+++T   TVTGVEMFQKTL E MAGDNVG+LL G+Q  DILRGMVLA PG+ITP T
Sbjct:  111 HDLVAQVDEYIPAPERDIDKPFLMAVEDVFSITGRGTVATGRIERGKVKVGEQIEIVGIRDTTQSTVTGVEMFQKTLDEGMAGDNVGVLLRGIQKEDILRGMVLAKPGSITPHT 224
The following BLAST results are available for this feature:
BLAST of CF834423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SYNP63.767e-3968.14Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNP23.767e-3971.56Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNJB3.767e-3970.18Elongation factor Tu OS=Synechococcus sp. GN=tuf P... [more]
EFTU_SYNJA3.767e-3970.18Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNE73.767e-3968.14Elongation factor Tu OS=Synechococcus elongatus (s... [more]
EFTU_ANASP6.426e-3968.42Elongation factor Tu OS=Anabaena sp. (strain PCC 7... [more]
EFTU_GLOS18.393e-3969.91Elongation factor Tu (Fragment) OS=Gloeothece sp. ... [more]
EFTU_RHDSA1.096e-3864.91Elongation factor Tu, chloroplastic OS=Rhodomonas ... [more]
EFTU_OLTVI1.096e-3869.30Elongation factor Tu, chloroplastic OS=Oltmannsiel... [more]
EFTU_PHOEC1.870e-3866.67Elongation factor Tu (Fragment) OS=Phormidium ecto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05I03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834423 ID=CF834423; Name=CF834423; organism=Citrus sinensis; type=EST; length=345bp
TTATGAGATTACCCCTTCTGTTGATAGATACATTCCTATCCCACAAAGAC
AAACTGATTTGCCCTTTTTGTTAGCTGTTGAATATGTGTTTTCAATTACT
GGTCGTGGTACTGTGGCCACTGGCCGTGTTGAGAGAGGCACTATTAAGGT
TGGACAGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTG
TAACTGGGGTTGAAATGTTTCAAAAGACTCTATACGAGGCAATGGCTGGG
GATAATGTCGGGTTGTTACTTACAGGTGTACAATAGGCTGATATTCTGAG
AGGGATGGTGTTGGCCTAGCCCGGAACAATTACTCCCCGTACTAA
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