CF834423

Overview
NameCF834423
Unique NameCF834423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:354..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_GLOVI (Elongation factor Tu OS=Gloeobacter violaceus GN=tufA PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 3.526e-37
Identity = 73/114 (64.04%), Postives = 94/114 (82.46%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            Y +  +VD YIP P+R  D PFL+AVE VFSITGRGTVATGR+ERG +KVG+T++LVG++ TR+ TVTG+EMFQK+L E +AGDN+G+LL G++  D+ RGMVLA PG+ITP T
Sbjct:  200 YSLMDAVDAYIPTPERAIDKPFLMAVEDVFSITGRGTVATGRIERGKVKVGETIELVGIRGTRSTTVTGLEMFQKSLDEGLAGDNIGVLLRGIKKEDVERGMVLAKPGSITPHT 313          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_CYAA5 (Elongation factor Tu OS=Cyanothece sp. (strain ATCC 51142) GN=tuf PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.526e-37
Identity = 75/113 (66.37%), Postives = 95/113 (84.07%), Query Frame = 2
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            E+  +VD  IP P+R+ D PFL+AVE VFSI+GRGTVATGR+ERG +KVG+T+++VG+++TR+ TVTGVEMFQKTL E MAGDNVGLLL G++  DI RGMV+A PG+ITP T
Sbjct:  201 ELMKAVDDNIPEPEREIDKPFLMAVEDVFSISGRGTVATGRIERGKVKVGETIEIVGIRDTRSTTVTGVEMFQKTLDEGMAGDNVGLLLRGIKKEDIERGMVIAKPGSITPHT 313          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_OSTTA (Elongation factor Tu, chloroplastic OS=Ostreococcus tauri GN=tufA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.605e-37
Identity = 76/114 (66.67%), Postives = 93/114 (81.58%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            + +  +VD YIP P R+TD  FL+AVE VFSITGRGTVATGRVERGT+KVG +++++G  +TR  TVTG+EMFQKTL E++AGDNVG+LL G+Q  DI RGMVLA PGTITP T
Sbjct:  200 FSLMDNVDSYIPTPARETDKTFLMAVEDVFSITGRGTVATGRVERGTVKVGASIEIIGYVDTRVATVTGLEMFQKTLEESVAGDNVGVLLRGIQKEDIERGMVLAQPGTITPHT 313          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_CYACA (Elongation factor Tu, chloroplastic OS=Cyanidium caldarium GN=tufA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.605e-37
Identity = 77/112 (68.75%), Postives = 91/112 (81.25%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITP 337
            +E+   VD+Y P P+R  D  FL+AVE VFSITGRGTVATGR+ERG IKVG+TV++VGLK T + TVTG+EMFQKTL E +AGDNVG+LL GVQ  DI RGMVLA PG+ITP
Sbjct:  201 FELMDMVDKYFPTPERDIDKTFLMAVEDVFSITGRGTVATGRIERGAIKVGETVEIVGLKSTASTTVTGLEMFQKTLDEGLAGDNVGVLLRGVQKQDIERGMVLAKPGSITP 312          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_GRATL (Elongation factor Tu, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=tufA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.015e-37
Identity = 76/114 (66.67%), Postives = 90/114 (78.95%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            + +  +VD YIP P R  +  FL+AVE VFSITGRGTVATGR+ERG IKVG T+++VGL+ET   T+TG+EMFQKTL E MAGDN+G+LL GVQ  DI RGMVLA PGTITP T
Sbjct:  200 HSLMDAVDEYIPTPVRDVEKTFLMAVEDVFSITGRGTVATGRIERGIIKVGDTIEIVGLRETTTTTITGLEMFQKTLDEGMAGDNIGILLRGVQKKDIERGMVLAQPGTITPHT 313          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP8 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 8801) GN=tuf PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.340e-36
Identity = 75/108 (69.44%), Postives = 91/108 (84.26%), Query Frame = 2
Query:   20 VDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            VD YIP P+R+ D PFL+AVE VFSI+GRGTVATGR+ERG +KVG+TV++VG++ T + TVTGVEMFQKTL E +AGDNVGLLL GV+  DI RGMV+A PG+ITP T
Sbjct:  206 VDAYIPEPEREIDKPFLMAVEDVFSISGRGTVATGRIERGKVKVGETVEIVGIRATSSTTVTGVEMFQKTLEEGLAGDNVGLLLRGVKKEDIERGMVIAKPGSITPHT 313          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_CHLRE (Elongation factor Tu, chloroplastic OS=Chlamydomonas reinhardtii GN=tufA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.340e-36
Identity = 75/114 (65.79%), Postives = 91/114 (79.82%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            Y++  +VD YIP PQR+TD PFLLAVE V SITGRGTVATGRVERG +++   V++VGL+ T+   VTG+EMF+KTL E +AGDNVG+LL GVQ  DI RGMV+A PGTITP T
Sbjct:  200 YQLMDNVDSYIPTPQRETDKPFLLAVEDVLSITGRGTVATGRVERGALRISDNVEIVGLRPTQTAVVTGLEMFKKTLDETLAGDNVGVLLRGVQKKDIERGMVIAKPGTITPHT 313          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_SYNSC (Elongation factor Tu OS=Synechococcus sp. (strain CC9605) GN=tuf PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.750e-36
Identity = 75/113 (66.37%), Postives = 91/113 (80.53%), Query Frame = 2
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            E+  +VD  IP P+R+ D PFL+AVE VFSITGRGTVATGR+ERG +KVG+ +++VG+K+TR  TVTGVEMF+K L E MAGDNVGLLL G+Q  DI RGMVL  PG+ITP T
Sbjct:  191 ELMAAVDSSIPEPEREVDKPFLMAVEDVFSITGRGTVATGRIERGIVKVGEEIEIVGIKDTRKTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKPGSITPHT 303          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_NOSP7 (Elongation factor Tu OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tuf PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.750e-36
Identity = 72/114 (63.16%), Postives = 92/114 (80.70%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            YE+  +VD +IP P+R  D PFL+AVE VF+ITGRGTVATGR+ERG +KVG TV+L+GLK+TR   VTG+EMF+K+L E +AGDN G+LL G++  DI RGMV+A PG+ITP T
Sbjct:  200 YELMDAVDSFIPTPERDVDKPFLMAVEDVFTITGRGTVATGRIERGKVKVGDTVELIGLKDTRTTAVTGIEMFKKSLEEGLAGDNAGVLLRGLKKEDIERGMVIAKPGSITPHT 313          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_GRALE (Elongation factor Tu, chloroplastic (Fragment) OS=Gracilaria lemaneiformis GN=tufA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.750e-36
Identity = 75/114 (65.79%), Postives = 89/114 (78.07%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            + +  +VD YIP P R  +  FL+AVE VFSITGRGTV TGR+ERG IKVG T+++VGL+ET   T+TG+EMFQKTL E MAGDN+G+LL GVQ  DI RGMVLA PGTITP T
Sbjct:  111 HSLMDAVDEYIPTPVRDVEKTFLMAVEDVFSITGRGTVTTGRIERGIIKVGDTIEIVGLRETTTTTITGLEMFQKTLDEGMAGDNIGILLRGVQKKDIERGMVLAQPGTITPHT 224          
The following BLAST results are available for this feature:
BLAST of CF834423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_GLOVI3.526e-3764.04Elongation factor Tu OS=Gloeobacter violaceus GN=t... [more]
EFTU_CYAA53.526e-3766.37Elongation factor Tu OS=Cyanothece sp. (strain ATC... [more]
EFTU_OSTTA4.605e-3766.67Elongation factor Tu, chloroplastic OS=Ostreococcu... [more]
EFTU_CYACA4.605e-3768.75Elongation factor Tu, chloroplastic OS=Cyanidium c... [more]
EFTU_GRATL6.015e-3766.67Elongation factor Tu, chloroplastic OS=Gracilaria ... [more]
EFTU_CYAP81.340e-3669.44Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_CHLRE1.340e-3665.79Elongation factor Tu, chloroplastic OS=Chlamydomon... [more]
EFTU_SYNSC1.750e-3666.37Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_NOSP71.750e-3663.16Elongation factor Tu OS=Nostoc punctiforme (strain... [more]
EFTU_GRALE1.750e-3665.79Elongation factor Tu, chloroplastic (Fragment) OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05I03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834423 ID=CF834423; Name=CF834423; organism=Citrus sinensis; type=EST; length=345bp
TTATGAGATTACCCCTTCTGTTGATAGATACATTCCTATCCCACAAAGAC
AAACTGATTTGCCCTTTTTGTTAGCTGTTGAATATGTGTTTTCAATTACT
GGTCGTGGTACTGTGGCCACTGGCCGTGTTGAGAGAGGCACTATTAAGGT
TGGACAGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTG
TAACTGGGGTTGAAATGTTTCAAAAGACTCTATACGAGGCAATGGCTGGG
GATAATGTCGGGTTGTTACTTACAGGTGTACAATAGGCTGATATTCTGAG
AGGGATGGTGTTGGCCTAGCCCGGAACAATTACTCCCCGTACTAA
back to top