CF834423

Overview
NameCF834423
Unique NameCF834423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_PROM0 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9301) GN=tuf PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.310e-35
Identity = 75/113 (66.37%), Postives = 90/113 (79.65%), Query Frame = 2
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            E+  +VD  IP P+R+ D PFL+AVE VFSITGRGTVATGR+ERG +KVG+ V++VG+++TR  TVTGVEMF+K L E MAGDNVGLLL GVQ  DI RGMVL   G+ITP T
Sbjct:  191 ELMKAVDASIPEPEREVDKPFLMAVEDVFSITGRGTVATGRIERGKVKVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHT 303          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_PROMP (Elongation factor Tu OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=tuf PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.630e-35
Identity = 75/113 (66.37%), Postives = 90/113 (79.65%), Query Frame = 2
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            E+  +VD  IP P+R+ D PFL+AVE VFSITGRGTVATGR+ERG +KVG+ V++VG+++TR  TVTGVEMF+K L E MAGDNVGLLL GVQ  DI RGMVL   G+ITP T
Sbjct:  191 ELMTAVDASIPEPEREIDKPFLMAVEDVFSITGRGTVATGRIERGKVKVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHT 303          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_PROM5 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9515) GN=tuf PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.352e-35
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = 2
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            E+  +VD  IP P+R+ D PFL+A+E VFSITGRGTVATGR+ERG +KVG+ V++VG+++TR  TVTGVEMF+K L E MAGDNVGLLL GVQ  DI RGMVL   G+ITP T
Sbjct:  191 ELMKAVDASIPEPEREIDKPFLMAIEDVFSITGRGTVATGRIERGKVKVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHT 303          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_BRYPL (Elongation factor Tu, chloroplastic (Fragment) OS=Bryopsis plumosa GN=tufA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.352e-35
Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITP 337
            Y++   VD YIP+P R TD PFL+A+E V SITGRGTV TGRVERG  +VG  +++VGLKETR  T+TG+EMFQKTL +++AGDNVG+LL G+Q  ++  GMVLA PG+ITP
Sbjct:  111 YDLMNEVDNYIPLPTRDTDKPFLMAIENVVSITGRGTVTTGRVERGADQVGDNIEIVGLKETRQATITGLEMFQKTLEKSVAGDNVGVLLRGIQKEEVEPGMVLAKPGSITP 222          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_PROWI (Elongation factor Tu, plastid OS=Prototheca wickerhamii GN=tufA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.603e-35
Identity = 72/114 (63.16%), Postives = 90/114 (78.95%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            Y +   VD YIP P+R  + PFL+A+E VFSITGRGTVATGRVERG +K+G +V++VGL  T+  TVTG+EMFQKTL E++AGDNVG+LL G+Q  +I RGMVLA P +ITP T
Sbjct:  200 YNLMDIVDSYIPTPKRNIEKPFLMAIEDVFSITGRGTVATGRVERGVVKIGDSVEIVGLGATKITTVTGLEMFQKTLDESIAGDNVGILLRGIQKTEIQRGMVLAKPKSITPHT 313          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_BORT9 (Elongation factor Tu OS=Borrelia turicatae (strain 91E135) GN=tuf PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.638e-34
Identity = 74/111 (66.67%), Postives = 86/111 (77.48%), Query Frame = 2
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITP 337
            E+  ++D Y  +PQR  D PFLLAVE VFSI+GRGTVATGR+ERG IKVGQ V++VG++ETR  TVTGVEMFQK L +  AGDNVGLLL GV   DI RG V+A  GTITP
Sbjct:  192 ELLETMDNYFDLPQRDIDKPFLLAVEDVFSISGRGTVATGRIERGVIKVGQEVEIVGIRETRKTTVTGVEMFQKILEQGQAGDNVGLLLRGVDKKDIERGQVIAAIGTITP 302          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_ODOSI (Elongation factor Tu, chloroplastic OS=Odontella sinensis GN=tufA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.139e-34
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            + +  +VD YIP P+R  +  FL+A+E VFSITGRGTVATGR+ERG +KVG TV++VG+ +T+  T+TG+EMFQKTL E  AGDNVG+LL GV   DI  GMVL+ PGTITP T
Sbjct:  200 FALMDAVDEYIPTPERDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGDTVEIVGVGDTQTTTITGIEMFQKTLDEGFAGDNVGILLRGVTREDIEAGMVLSEPGTITPHT 313          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_MESVI (Elongation factor Tu, chloroplastic OS=Mesostigma viride GN=tufA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.139e-34
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKE-TRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITP 337
            Y +   VD+YIP PQR TD PFL+A+E VFSITGRGTVATGRVERG + VG+ VD+VGL    +N TVTG+EMFQKTL E++AGDNVG+LL G+Q   + RGMVLA P TI P
Sbjct:  200 YALMDQVDKYIPTPQRDTDKPFLMAIEDVFSITGRGTVATGRVERGKVVVGENVDIVGLANIPQNTTVTGLEMFQKTLEESVAGDNVGVLLRGIQKDQVERGMVLAKPNTIKP 312          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_PROMA (Elongation factor Tu OS=Prochlorococcus marinus GN=tuf PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.794e-34
Identity = 73/113 (64.60%), Postives = 89/113 (78.76%), Query Frame = 2
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            E+  +VD  IP P+R+ D PFL+AVE VFSITGRGTVATGR+ERG + VG+ V++VG+++TR  TVTGVEMF+K L E MAGDNVGLLL G+Q  DI RGMVL   G+ITP T
Sbjct:  191 ELMKAVDASIPEPEREVDKPFLMAVEDVFSITGRGTVATGRIERGKVTVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKKGSITPHT 303          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_CYCME (Elongation factor Tu, chloroplastic OS=Cyclotella meneghiniana GN=tufA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.649e-34
Identity = 71/114 (62.28%), Postives = 87/114 (76.32%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            Y +  +VD YIP P+R  +  FL+A+E VFSITGRGTVATGR+ERG IKV   V++VG+ +T+  T+TG+EMFQKTL E  AGDNVG+LL GV   +I RGMVLA PGTITP T
Sbjct:  200 YALMDAVDAYIPTPERDVEKTFLMAIEDVFSITGRGTVATGRIERGVIKVVDNVEIVGIGDTKTTTITGIEMFQKTLEEGFAGDNVGILLRGVTRENIERGMVLAKPGTITPHT 313          
The following BLAST results are available for this feature:
BLAST of CF834423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PROM04.310e-3566.37Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROMP5.630e-3566.37Elongation factor Tu OS=Prochlorococcus marinus su... [more]
EFTU_PROM57.352e-3565.49Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_BRYPL7.352e-3562.50Elongation factor Tu, chloroplastic (Fragment) OS=... [more]
EFTU_PROWI9.603e-3563.16Elongation factor Tu, plastid OS=Prototheca wicker... [more]
EFTU_BORT91.638e-3466.67Elongation factor Tu OS=Borrelia turicatae (strain... [more]
EFTU_ODOSI2.139e-3461.40Elongation factor Tu, chloroplastic OS=Odontella s... [more]
EFTU_MESVI2.139e-3465.49Elongation factor Tu, chloroplastic OS=Mesostigma ... [more]
EFTU_PROMA2.794e-3464.60Elongation factor Tu OS=Prochlorococcus marinus GN... [more]
EFTU_CYCME3.649e-3462.28Elongation factor Tu, chloroplastic OS=Cyclotella ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05I03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834423 ID=CF834423; Name=CF834423; organism=Citrus sinensis; type=EST; length=345bp
TTATGAGATTACCCCTTCTGTTGATAGATACATTCCTATCCCACAAAGAC
AAACTGATTTGCCCTTTTTGTTAGCTGTTGAATATGTGTTTTCAATTACT
GGTCGTGGTACTGTGGCCACTGGCCGTGTTGAGAGAGGCACTATTAAGGT
TGGACAGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTG
TAACTGGGGTTGAAATGTTTCAAAAGACTCTATACGAGGCAATGGCTGGG
GATAATGTCGGGTTGTTACTTACAGGTGTACAATAGGCTGATATTCTGAG
AGGGATGGTGTTGGCCTAGCCCGGAACAATTACTCCCCGTACTAA
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