CF834423

Overview
NameCF834423
Unique NameCF834423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:354..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_ASTLO (Elongation factor Tu, plastid OS=Astasia longa GN=tufA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.649e-34
Identity = 70/111 (63.06%), Postives = 89/111 (80.18%), Query Frame = 2
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITP 337
            ++   +D YIP P R TD  FLLA+E V SITGRGTVATGR+ERG IKVG+TV+L+GLK  ++ T+TG+EMFQK+L EA+AGDNVG+LL G+Q  ++ RGMV+A PGTI P
Sbjct:  201 DLMDKIDSYIPTPIRDTDKDFLLAIEDVLSITGRGTVATGRIERGKIKVGETVELIGLKNIKSTTITGLEMFQKSLDEAIAGDNVGVLLRGIQKNEVERGMVIAKPGTIQP 311          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_THAPS (Elongation factor Tu, chloroplastic OS=Thalassiosira pseudonana GN=tufA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.766e-34
Identity = 69/114 (60.53%), Postives = 88/114 (77.19%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            + +  +VD YIP P+R  +  FL+A+E VFSITGRGTVATGR+ERG +KVG  V++VG+ +T+  T+TG+EMFQKTL E  AGDNVG+LL GV   +I RGMVL+ PGTITP T
Sbjct:  200 FALMDAVDAYIPTPERDVEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGDNVEIVGVGDTQTTTITGIEMFQKTLEEGFAGDNVGILLRGVTRENIERGMVLSKPGTITPHT 313          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_PROM1 (Elongation factor Tu OS=Prochlorococcus marinus (strain NATL1A) GN=tuf PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.129e-34
Identity = 72/113 (63.72%), Postives = 89/113 (78.76%), Query Frame = 2
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            ++  +VD  IP P+R+ D PFL+AVE VFSITGRGTVATGR+ERG + VG+ V++VG+++TR  TVTGVEMF+K L E MAGDNVGLLL G+Q  DI RGMVL   G+ITP T
Sbjct:  191 DLMTAVDASIPEPEREIDKPFLMAVEDVFSITGRGTVATGRIERGKVTVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKKGSITPHT 303          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_CODFR (Elongation factor Tu, chloroplastic OS=Codium fragile GN=tufA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.129e-34
Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITP 337
            Y++  +VD YIP P+R T+ PFL+A+E V SITGRGTVATGRVERG I+VGQTV+LVGLK T+   +TG+EMF KTL +++AGDNVG+LL  +Q  +I RGMVLA P +I P
Sbjct:  199 YDLMETVDEYIPTPKRDTEKPFLMAIENVVSITGRGTVATGRVERGMIEVGQTVELVGLKNTKEAIITGLEMFHKTLEKSVAGDNVGILLRRIQKEEIQRGMVLAKPSSILP 310          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_BORRA (Elongation factor Tu OS=Borrelia recurrentis (strain A1) GN=tuf PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.129e-34
Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = 2
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITP 337
            E+  ++D Y  +P+R  D PFLLA+E VFSI+GRGTVATGR+ERG IKVGQ V++VG++ETR  TVTGVEMFQK L +  AGDNVGLLL GV   DI RG V+A  GTITP
Sbjct:  192 ELLETMDNYFDLPERDIDKPFLLAIEDVFSISGRGTVATGRIERGVIKVGQEVEIVGIRETRKTTVTGVEMFQKILEQGEAGDNVGLLLRGVDKKDIERGQVIAALGTITP 302          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_BORDL (Elongation factor Tu OS=Borrelia duttonii (strain Ly) GN=tuf PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.129e-34
Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = 2
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITP 337
            E+  ++D Y  +P+R  D PFLLA+E VFSI+GRGTVATGR+ERG IKVGQ V++VG++ETR  TVTGVEMFQK L +  AGDNVGLLL GV   DI RG V+A  GTITP
Sbjct:  192 ELLETMDNYFDLPERDIDKPFLLAIEDVFSISGRGTVATGRIERGVIKVGQEVEIVGIRETRKTTVTGVEMFQKILEQGEAGDNVGLLLRGVDKKDIERGQVIAALGTITP 302          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_PROMT (Elongation factor Tu OS=Prochlorococcus marinus (strain NATL2A) GN=tuf PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.062e-33
Identity = 71/113 (62.83%), Postives = 89/113 (78.76%), Query Frame = 2
Query:    5 EITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            ++  +VD  IP P+R+ D PFL+A+E VFSITGRGTVATGR+ERG + VG+ V++VG+++TR  TVTGVEMF+K L E MAGDNVGLLL G+Q  DI RGMVL   G+ITP T
Sbjct:  191 DLMTAVDASIPEPEREIDKPFLMAIEDVFSITGRGTVATGRIERGKVTVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKKGSITPHT 303          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMF (Elongation factor Tu OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.811e-33
Identity = 70/114 (61.40%), Postives = 85/114 (74.56%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            +E+  ++D YIP P+R  D PFLL +E VFSI+GRGTV TGRVERG I VG  +++VGLKET+  T TGVEMF+K L E  AGDNVG+LL G +  D+ RG VLA PGTITP T
Sbjct:  190 FELAAALDSYIPTPERAVDKPFLLPIEDVFSISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHT 303          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMB (Elongation factor Tu OS=Neisseria meningitidis serogroup B GN=tufA PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.811e-33
Identity = 70/114 (61.40%), Postives = 85/114 (74.56%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            +E+  ++D YIP P+R  D PFLL +E VFSI+GRGTV TGRVERG I VG  +++VGLKET+  T TGVEMF+K L E  AGDNVG+LL G +  D+ RG VLA PGTITP T
Sbjct:  190 FELAAALDSYIPTPERAVDKPFLLPIEDVFSISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHT 303          
BLAST of CF834423 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMA (Elongation factor Tu OS=Neisseria meningitidis serogroup A GN=tufA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.811e-33
Identity = 70/114 (61.40%), Postives = 85/114 (74.56%), Query Frame = 2
Query:    2 YEITPSVDRYIPIPQRQTDLPFLLAVEYVFSITGRGTVATGRVERGTIKVGQTVDLVGLKETRNFTVTGVEMFQKTLYEAMAGDNVGLLLTGVQ*ADILRGMVLA*PGTITPRT 343
            +E+  ++D YIP P+R  D PFLL +E VFSI+GRGTV TGRVERG I VG  +++VGLKET+  T TGVEMF+K L E  AGDNVG+LL G +  D+ RG VLA PGTITP T
Sbjct:  190 FELAAALDSYIPTPERAVDKPFLLPIEDVFSISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHT 303          
The following BLAST results are available for this feature:
BLAST of CF834423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_ASTLO3.649e-3463.06Elongation factor Tu, plastid OS=Astasia longa GN=... [more]
EFTU_THAPS4.766e-3460.53Elongation factor Tu, chloroplastic OS=Thalassiosi... [more]
EFTU_PROM18.129e-3463.72Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_CODFR8.129e-3462.50Elongation factor Tu, chloroplastic OS=Codium frag... [more]
EFTU_BORRA8.129e-3464.86Elongation factor Tu OS=Borrelia recurrentis (stra... [more]
EFTU_BORDL8.129e-3464.86Elongation factor Tu OS=Borrelia duttonii (strain ... [more]
EFTU_PROMT1.062e-3362.83Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_NEIMF1.811e-3361.40Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU_NEIMB1.811e-3361.40Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU_NEIMA1.811e-3361.40Elongation factor Tu OS=Neisseria meningitidis ser... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05I03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834423 ID=CF834423; Name=CF834423; organism=Citrus sinensis; type=EST; length=345bp
TTATGAGATTACCCCTTCTGTTGATAGATACATTCCTATCCCACAAAGAC
AAACTGATTTGCCCTTTTTGTTAGCTGTTGAATATGTGTTTTCAATTACT
GGTCGTGGTACTGTGGCCACTGGCCGTGTTGAGAGAGGCACTATTAAGGT
TGGACAGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTG
TAACTGGGGTTGAAATGTTTCAAAAGACTCTATACGAGGCAATGGCTGGG
GATAATGTCGGGTTGTTACTTACAGGTGTACAATAGGCTGATATTCTGAG
AGGGATGGTGTTGGCCTAGCCCGGAACAATTACTCCCCGTACTAA
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