CF834499

Overview
NameCF834499
Unique NameCF834499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: RPN2_CANGA (26S proteasome regulatory subunit RPN2 OS=Candida glabrata GN=RPN2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.520e-45
Identity = 89/189 (47.09%), Postives = 135/189 (71.43%), Query Frame = 1
Query:   64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL-LSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGL-NYDLKVPRFEFLSHAK 624
            ALGFVL  +    PRIV LL+ES+N H R GAA A+GI+CAG GL  AI +LEP+T D  DFVRQ A+I++++VM+Q  E  + +V +       +I +KH++ ++K GA +A GI++AGGRNVTI+L  ++T      +VVGL++F+QFWYW+P+ +F+SL+F+PT ++G+   DL +P+F+   +A+
Sbjct:  587 ALGFVLLRDYTTVPRIVQLLAESHNAHDRCGAAFALGIACAGKGLQAAIDVLEPMTKDPADFVRQAAMISLSLVMIQQTEKMNPKVASINSHFLSVITNKHQEGLAKFGACVALGIMNAGGRNVTIQLENAETGTLDTKSVVGLAMFTQFWYWFPMAHFLSLSFTPTTIVGVRGSDLNIPKFDMNCYAR 775          
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_CAEEL (26S proteasome non-ATPase regulatory subunit 1 OS=Caenorhabditis elegans GN=rpn-2 PE=1 SV=4)

HSP 1 Score: 171.014 bits (432), Expect = 4.448e-42
Identity = 80/185 (43.24%), Postives = 128/185 (69.19%), Query Frame = 1
Query:   67 LGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHA 621
            +GFVL  +P      V++L+E +N HVRYGAA+A+GI+CAGTG  EAI+L+EP+ SD   FVR+GAL+++A++M Q  +    +V  FR+QL K I +K+ED++ K GAI+A G+LD GG+N  + + +  K   + ++VG+  F   W+W+ + +FI+LA  P+ L+ +N +LK+P  +++ HA
Sbjct:  601 IGFVLSKDPSTCLSYVAMLTEHFNGHVRYGAAMALGIACAGTGNMEAIALIEPMISDKEGFVRKGALLSLALIMCQQTDYTCPKVNGFRKQLLKKIGEKNEDSLVKFGAIIAQGLLDIGGQNAAVTMQNSDKQPDMGSMVGMMCFLHGWFWHSMHFFIALAAKPSCLVMMNENLKIPVLDYICHA 785          
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: RPN2_ENCCU (26S proteasome regulatory subunit RPN2 OS=Encephalitozoon cuniculi GN=RPN2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.806e-20
Identity = 54/181 (29.83%), Postives = 89/181 (49.17%), Query Frame = 1
Query:   64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFE 606
            A+G V   + +     +  LSE++N  VR   A+ +G+  +GTG     ++LE L  D    VRQ A I +  + +Q N            +L ++I+DK E    ++GA+L  G+ + GGRN+   + + +       + G  +F  +WYW+PLI  +SL   PT +   N DL+    E
Sbjct:  537 AIGLVCCDDRDLLVGTLEPLSENHNFFVRAAVAVVLGLFLSGTGDKVCTNILEALMYDTNSLVRQSACIGVGFITMQCNPELVPNYKRIIEKLNRLIVDKKESGAVELGAVLGRGLSEGGGRNIVFSVRNMSGITSADRIAGAVLFLHYWYWHPLISMVSLCALPTTVFCFNEDLEEEEIE 717          
The following BLAST results are available for this feature:
BLAST of CF834499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RPN2_CANGA2.520e-4547.0926S proteasome regulatory subunit RPN2 OS=Candida ... [more]
PSMD1_CAEEL4.448e-4243.2426S proteasome non-ATPase regulatory subunit 1 OS=... [more]
RPN2_ENCCU2.806e-2029.8326S proteasome regulatory subunit RPN2 OS=Encephal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834499 ID=CF834499; Name=CF834499; organism=Citrus sinensis; type=EST; length=630bp
CGCCAGCTGCTCCTTTTAGCCGTATCGGATGTGAGTGATGATGTCAGGAG
GACCTCTGTTCTAGCACTTGGTTTTGTCCTGTACTCTGAGCCGGAGCAGA
CTCCTCGAATTGTGTCTCTGCTGTCTGAGTCATATAATCCACATGTTCGC
TATGGTGCGGCTCTTGCAGTAGGTATCTCCTGTGCAGGTACAGGACTGAG
CGAGGCTATATCATTGCTGGAGCCTCTTACATCAGATGTCGTTGATTTTG
TTCGCCAAGGTGCACTCATTGCAATGGCTATGGTCATGGTCCAGATTAAT
GAAGCTAATGATTCTCGTGTTGGAACCTTCAGGCGACAATTGGAAAAAAT
AATTCTTGATAAGCATGAAGATACCATGAGCAAGATGGGAGCAATCTTGG
CCTCTGGAATCCTTGATGCTGGTGGAAGGAACGTAACTATAAGATTGCTT
TCAAAGACGAAACATGATAAAATCACTGCAGTAGTTGGTCTCTCTGTTTT
TAGCCAGTTTTGGTATTGGTATCCCCTTATATACTTCATTAGCTTGGCGT
TTTCACCCACTGCTTTAATTGGACTCAACTATGACTTGAAAGTTCCTCGG
TTTGAATTCTTATCACATGCGAAACCTTCT
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