CF834510

Overview
NameCF834510
Unique NameCF834510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME38_ARATH (Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.206e-25
Identity = 57/137 (41.61%), Postives = 79/137 (57.66%), Query Frame = -3
Query:  118 NMVPAQGRTAPNQNPGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRPVVMQSPIGDHIDPAGWSEWSGDFALKPLYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFPVAELIGGGSWLKSTGVAYTEGL 528
            N + AQ R  PNQ  G  I    V  +  ++   G +++YLGRPW+ Y+R VV+ + +   I+P GW +W    AL  LYYGEY N GPG+GT  RV W G+ VI   +EA++F + + I   SWL  T V +T  L
Sbjct:  340 NTITAQSRFNPNQTTGIVIHNSVVKGAPGVQ--LGGVKTYLGRPWRSYARTVVIGTYLDTLIEPNGWIDWDNVTALSTLYYGEYQNSGPGSGTENRVDWAGFHVISDIQEAREFTLPKFIDSASWLPPTKVPFTINL 474          
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.417e-25
Identity = 61/127 (48.03%), Postives = 75/127 (59.06%), Query Frame = -3
Query:  163 KQSNMVPAQGRTAPNQNPGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRPVVMQSPIGDHIDPAGWSEW--SGDFALKPLYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFPVAELIGG 537
            K  N++ A GRT   QN G ++  C +   SDL PVK    SYLGRPW++YSR +VM+S I D I   GW+ W  SGD  LK LY+GE+ N GP A  SKRV W G+  I   EEA  F V +   G
Sbjct:  370 KAYNVILANGRTDQRQNTGFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKYSRAIVMESYIDDAIAEGGWAGWLDSGDEVLKTLYFGEFKNYGPKARISKRVTWEGFHSI-GFEEANYFSVVKRRNG 495          
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.095e-24
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  151 RKPMSKQSNMVPAQGRTAPNQNPGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRPVVMQSPIGDHIDPAGWSEWSGDFALKP--LYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFPVAELI-GGGSWL 552
            R+P+  Q N + A+G    NQN G SI +C +  + ++     +  +YLGRPWK +S+ V+MQS IG  ++PAGW  W+  +   P  ++Y EY N GPG+  SKRVKW GY  I + +EA +F V   + G  +W+
Sbjct:  827 RQPLPNQFNTITAEGTQEANQNTGISIHQCTISPNGNV-----TATTYLGRPWKLFSKTVIMQSVIGSFVNPAGWIAWNSTYDPPPRTIFYREYKNSGPGSDLSKRVKWAGYKPISSDDEAARFTVKYFLRGDDNWI 958          
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.185e-24
Identity = 60/150 (40.00%), Postives = 83/150 (55.33%), Query Frame = -3
Query:  118 RKPMSKQSNMVPAQGRTAPNQNPGTSIQKCEVIASSDLEPVKGSIRS--YLGRPWKEYSRPVVMQSPIGDHIDPAGWSEWSGDFALKP---LYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFPVAELIGGGSWLKSTGVAYTEGL 552
            R+P+  Q N + AQG+  PNQN G  IQK      S + P   ++ +  YLGRPWK++S  V+MQS IG  ++P GW  W  +  ++P   ++Y EY N GPGA  S+RVKW GY        A++F V   I G  WL +  V +   L
Sbjct:  440 RQPLPNQFNTITAQGKKDPNQNTGIIIQK------STITPFGNNLTAPTYLGRPWKDFSTTVIMQSDIGALLNPVGWMSWVPN--VEPPTTIFYAEYQNSGPGADVSQRVKWAGYKPTITDRNAEEFTVQSFIQGPEWLPNAAVQFDSTL 581          
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.932e-21
Identity = 55/146 (37.67%), Postives = 78/146 (53.42%), Query Frame = -3
Query:  118 RKPMSKQSNMVPAQGRT-APNQNPGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRPVVMQSPIGDHIDPAGWSEWSGDFALKPLYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFPVAELIGGGSWLKSTGVAYTEGL 552
            RK    QSN V A G         G  +  C +I   +LE  K +I+SYLGRPWK+++  V++ + IGD I P GW+EW G+   K   Y E+ NRGPGA T++R  W    V  +  E + + VA  +G  +W++   V    GL
Sbjct:  445 RKGSPGQSNYVTADGNEKGAAMKIGIVLHNCRIIPDKELEADKLTIKSYLGRPWKKFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPW--VKVAKSAAEVETYTVANWVGPANWIQEANVPVQLGL 588          
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.759e-20
Identity = 55/146 (37.67%), Postives = 73/146 (50.00%), Query Frame = -3
Query:  118 RKPMSKQSNMVPAQGRTAP-NQNPGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRPVVMQSPIGDHIDPAGWSEWSGDFALKPLYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFPVAELIGGGSWLKSTGVAYTEGL 552
            RK    Q N V A G         G  +Q C ++    L   +  + SYLGRPWK++S  V++ S IGD I P GW  W G+   K   Y EY NRGPGA T++RV W    +  +  E   F VA  +G  +W++   V  T GL
Sbjct:  452 RKGNKGQFNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLAAERLIVESYLGRPWKKFSTTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPGAITNRRVNW--VKIARSAAEVNDFTVANWLGPINWIQEANVPVTLGL 595          
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.216e-20
Identity = 53/146 (36.30%), Postives = 73/146 (50.00%), Query Frame = -3
Query:  118 RKPMSKQSNMVPAQGRTAP-NQNPGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRPVVMQSPIGDHIDPAGWSEWSGDFALKPLYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFPVAELIGGGSWLKSTGVAYTEGL 552
            RK    Q N V A G         G  +Q C ++    L P + ++ +YLGRPWK++S  V+M + +GD I P GW  W G+   K   Y EY NRGPGA  ++RV W    V  +  E   F  A  +G  +W++   V  T GL
Sbjct:  445 RKGSKGQYNTVTADGNELGLGMKIGIVLQNCRIVPDRKLTPERLTVATYLGRPWKKFSTTVIMSTEMGDLIRPEGWKIWDGESFHKSCRYVEYNNRGPGAFANRRVNWA--KVARSAAEVNGFTAANWLGPINWIQEANVPVTIGL 588          
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.362e-19
Identity = 51/146 (34.93%), Postives = 76/146 (52.05%), Query Frame = -3
Query:  118 RKPMSKQSNMVPAQGRTAPNQ-NPGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRPVVMQSPIGDHIDPAGWSEWSGDFALKPLYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFPVAELIGGGSWLKSTGVAYTEGL 552
            RK    Q+N V A G         G  +  C ++A  +LE  + +++SYLGRPWK ++   V+ + IGD I P GW+EW G+       Y E+ NRGPGA T+ RV W    +  +  E ++F VA  +   +W++   V    GL
Sbjct:  441 RKGSPGQTNHVTADGNEKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANTAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVPVQLGL 584          
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.262e-19
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = -3
Query:  118 RKPMSKQSNMVPAQGRTAPNQ-NPGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRPVVMQSPIGDHIDPAGWSEWSGDFALKPLYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFPVAELIGGGSWLKSTGVAYTEGL 552
            RK    Q+N V A G+        G  +  C ++A  +LE  + +++SYLGRPWK ++   V+ + IGD I P GW+EW G+       Y E+ NRGPGA  + RV W    +  +  E ++F VA  +   +W++   V    GL
Sbjct:  428 RKGSPGQTNHVTADGKQKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVTVQLGL 571          
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.975e-19
Identity = 54/135 (40.00%), Postives = 72/135 (53.33%), Query Frame = -3
Query:  154 PMSKQSNMVPAQGRTAPNQNPGTSIQKCEVIASSD-LEPVKGSIR---SYLGRPWKEYSRPVVMQSPIGDHIDPAGWSEWSGDFALKPLYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFPVAELIGGGSW 546
            P   + N V AQGR  P+Q+ G     C +  + + ++  K + +   ++LGRPWK+YSR V +   +   I P GW  WSGDFALK LYYGE  N GPG+  S+RV W     IP  E    + VA  I    W
Sbjct:  415 PEKGEKNAVTAQGRIDPSQSTGFVFLNCLINGTEEYMKLFKANPKVHKNFLGRPWKDYSRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSWSSQ--IP-DEHVHVYSVANFIQADEW 546          
The following BLAST results are available for this feature:
BLAST of CF834510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PME38_ARATH2.206e-2541.61Putative pectinesterase/pectinesterase inhibitor 3... [more]
PME54_ARATH6.417e-2548.03Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME26_ARATH1.095e-2440.15Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME3_PHAVU3.185e-2440.00Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME37_ARATH1.932e-2137.67Probable pectinesterase/pectinesterase inhibitor V... [more]
PME5_ARATH4.759e-2037.67Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME4_ARATH6.216e-2036.30Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME_BRANA2.362e-1934.93Probable pectinesterase/pectinesterase inhibitor O... [more]
PME_BRACM5.262e-1934.25Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME51_ARATH8.975e-1940.00Probable pectinesterase/pectinesterase inhibitor 5... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05K11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834510 ID=CF834510; Name=CF834510; organism=Citrus sinensis; type=EST; length=554bp
TTTTTTTTTTTTTTTTTAAGAACCTAGAACAGCACGTTACTCGGATTCAT
TCATTATTCAACTGATAAAAAGCAGGGGCAAATACAAGCTTAAAAGATAT
ATGCTGAGCTGACATCACAGCCCCTCAGTATAAGCAACTCCAGTTGATTT
CAACCACGACCCTCCTCCGATAAGCTCAGCTACTGGAAATTTTTTTGCTT
CTTCTGGGGCTGGAATAACGGGATAGCCAGGCCATTTCACTCTTTTGCTA
GTCCCAGCACCTGGCCCTCTATTCAAATACTCCCCATAATACAGGGGCTT
CAGGGCAAAATCTCCACTCCATTCTGACCATCCAGCTGGATCGATATGAT
CCCCGATGGGGGACTGCATTACAACTGGTCTCGAGTATTCTTTCCAAGGG
CGGCCCAAGTACGAACGGATCGAGCCCTTTACGGGCTCCAGATCTGAGCT
TGCTATGACTTCACATTTTTGGATCGAAGTCCCTGGGTTTTGATTTGGGG
CAGTCCGTCCTTGGGCTGGGACCATGTTGGATTGCTTGCTCATGGGCTTT
CTGG
back to top