CF834510

Overview
NameCF834510
Unique NameCF834510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.818e-18
Identity = 49/134 (36.57%), Postives = 68/134 (50.75%), Query Frame = -3
Query:  142 SNMVPAQGRTAPNQNPGTSIQKCEVIASSD----LEPVKGSIRSYLGRPWKEYSRPVVMQSPIGDHIDPAGWSEWSGDFALKPLYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFPVAELIGGGSWLKST 531
            +N + A GR   +Q+ G     C +  + +     +      +++LGRPWKE+SR V +   +   I P GW  W+GDFALK LYYGEY N GPG+  S RV W     IP  +    + VA  I    W  +T
Sbjct:  471 NNAITAHGRIDASQSTGFVFLNCSINGTEEYMKEFQANPEGHKNFLGRPWKEFSRTVFVNCNLESLISPDGWMPWNGDFALKTLYYGEYKNTGPGSVRSSRVPWSS--EIP-EKHVDVYSVANFIQADEWASTT 601          
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.433e-16
Identity = 51/149 (34.23%), Postives = 69/149 (46.31%), Query Frame = -3
Query:  121 RKPMSKQSNMVPAQGRTAPNQNPGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRPVVMQSPIGDHIDPAGWSEWSGDFALKPLYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFP-----VAELIGGGSWLKSTGVAYTEG 552
            R P   Q  +V A GR   N       Q         L  V   + SYLGRPWK+YS+ V+M S I     P G+  W G    +   Y EY N+GPGA T+ RVKW G  V+ +   A+ +P     +       +W+  +GV Y+ G
Sbjct:  298 RLPAKGQQCLVTAGGREKQNSASALVFQSSHFTGEPALTSVTPKV-SYLGRPWKQYSKVVIMDSTIDAIFVPEGYMPWMGSAFKETCTYYEYNNKGPGADTNLRVKWHGVKVLTSNVAAEYYPGKFFEIVNATARDTWIVKSGVPYSLG 445          
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.584e-15
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = -3
Query:  325 RKPMSKQSNMVPAQGRTAPNQNPGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRPVVMQSPIGDHIDPAGWS 552
            RKP   Q+N++ AQ R       G S QKC + ASSDL P+KG+++++LGRPW+ +SR V M+S I D ID AGW+
Sbjct:  212 RKPGIGQTNILTAQSREEDTATSGFSFQKCNISASSDLTPIKGTVKTFLGRPWRAFSRVVFMESFIDDVIDRAGWT 287          
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 44/132 (33.33%), Postives = 64/132 (48.48%), Query Frame = -3
Query:  148 MSKQSNMVPAQGRTAPNQNPGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRPVVMQSPIGDHIDPAGWSEWSGDFALKPLYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFPVAELIGGGSWLK 543
            +S  +  + AQ RT+  +  G +   C++          GS  ++LGRPW  YSR V   S   + + P GW++W        +YYGEY   GPGA   +RV+W       + EEA  F   + IGG  WL+
Sbjct:  214 LSPNNGSITAQMRTSATEKSGFTFLGCKLT---------GSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKENTVYYGEYKCYGPGADREQRVEWSKQ---LSDEEATVFLSKDFIGGKDWLR 333          
BLAST of CF834510 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 42/131 (32.06%), Postives = 58/131 (44.27%), Query Frame = -3
Query:  148 SKQSNMVPAQGRTAPNQNPGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRPVVMQSPIGDHIDPAGWSEWSGDFALKPLYYGEYLNRGPGAGTSKRVKWPGYPVIPAPEEAKKFPVAELIGGGSWLK 540
            +K+   + A  R +  ++ G S   C++          G+ + YLGR W  YSR V     I D I P GWS+W      + + +GEY  RG GA    RV W         +E K F   E I G  WL+
Sbjct:  261 AKRYGAIAAHHRDSETEDTGFSFVNCDI---------SGTGQIYLGRAWGNYSRTVYSNCFIADIITPVGWSDWKHPERQRKVMFGEYNCRGRGAERGGRVPW---SKTLTRDEVKPFLGREFIYGDQWLR 379          
The following BLAST results are available for this feature:
BLAST of CF834510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PME64_ARATH5.818e-1836.57Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME_MEDSA1.433e-1634.23Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME56_ARATH1.584e-1550.00Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME11_ARATH5.096e-1433.33Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME62_ARATH4.038e-1132.06Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834510 ID=CF834510; Name=CF834510; organism=Citrus sinensis; type=EST; length=554bp
TTTTTTTTTTTTTTTTTAAGAACCTAGAACAGCACGTTACTCGGATTCAT
TCATTATTCAACTGATAAAAAGCAGGGGCAAATACAAGCTTAAAAGATAT
ATGCTGAGCTGACATCACAGCCCCTCAGTATAAGCAACTCCAGTTGATTT
CAACCACGACCCTCCTCCGATAAGCTCAGCTACTGGAAATTTTTTTGCTT
CTTCTGGGGCTGGAATAACGGGATAGCCAGGCCATTTCACTCTTTTGCTA
GTCCCAGCACCTGGCCCTCTATTCAAATACTCCCCATAATACAGGGGCTT
CAGGGCAAAATCTCCACTCCATTCTGACCATCCAGCTGGATCGATATGAT
CCCCGATGGGGGACTGCATTACAACTGGTCTCGAGTATTCTTTCCAAGGG
CGGCCCAAGTACGAACGGATCGAGCCCTTTACGGGCTCCAGATCTGAGCT
TGCTATGACTTCACATTTTTGGATCGAAGTCCCTGGGTTTTGATTTGGGG
CAGTCCGTCCTTGGGCTGGGACCATGTTGGATTGCTTGCTCATGGGCTTT
CTGG
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