CF834511

Overview
NameCF834511
Unique NameCF834511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834511 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.045e-21
Identity = 54/146 (36.99%), Postives = 79/146 (54.11%), Query Frame = 1
Query:    4 RKPLLKQSNMVTAQGRTDPNQ-NTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGVAYTEGL 438
            RK    Q+N VTA G+        G  +  C ++A  +LE  + +++SYLGRPWK ++ T V+ + IGD I P GW+EW G+    T  Y E+ NRGPGA  + RV W    +     E ++FTVA  +   +W++   V    GL
Sbjct:  428 RKGSPGQTNHVTADGKQKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVTVQLGL 571          
BLAST of CF834511 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.845e-18
Identity = 55/149 (36.91%), Postives = 71/149 (47.65%), Query Frame = 1
Query:    4 RKPLLKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEA-----KKFTVAELIGGGSWLKSTGVAYTEG 435
            R P   Q  +VTA GR   N  +    Q         L  V   + SYLGRPWK+YS+ V+M S I     P G+  W G    +T  Y EY N+GPGA T+ RVKW G  V+T    A     K F +       +W+  +GV Y+ G
Sbjct:  298 RLPAKGQQCLVTAGGREKQNSASALVFQSSHFTGEPALTSVTPKV-SYLGRPWKQYSKVVIMDSTIDAIFVPEGYMPWMGSAFKETCTYYEYNNKGPGADTNLRVKWHGVKVLTSNVAAEYYPGKFFEIVNATARDTWIVKSGVPYSLG 445          
BLAST of CF834511 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.147e-18
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 ARKPLLKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWS 231
            ARKP + Q+N++TAQ R +    +G S QKC + ASSDL P+KG+++++LGRPW+ +SR V M+S I D ID AGW+
Sbjct:  211 ARKPGIGQTNILTAQSREEDTATSGFSFQKCNISASSDLTPIKGTVKTFLGRPWRAFSRVVFMESFIDDVIDRAGWT 287          
BLAST of CF834511 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.024e-16
Identity = 46/132 (34.85%), Postives = 64/132 (48.48%), Query Frame = 1
Query:   13 LLKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLK 408
            L   +  +TAQ RT   + +G +   C++          GS  ++LGRPW  YSR V   S   + + P GW++W       T+YYGEY   GPGA   +RV+W         EEA  F   + IGG  WL+
Sbjct:  214 LSPNNGSITAQMRTSATEKSGFTFLGCKLT---------GSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKENTVYYGEYKCYGPGADREQRVEWSKQ---LSDEEATVFLSKDFIGGKDWLR 333          
BLAST of CF834511 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.757e-14
Identity = 47/125 (37.60%), Postives = 62/125 (49.60%), Query Frame = 1
Query:   34 VTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLK 408
            VTAQGR+   ++TG S  KC+V  +  L         YLGR W  +SR V   +++ + I P GW  W       T++YG+Y   G GA    RV W     +TD EEAK F     I G  W+K
Sbjct:  270 VTAQGRSSVLEDTGFSFVKCKVTGTGVL---------YLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGRVAWA--RELTD-EEAKPFLSLTFIDGSEWIK 382          
BLAST of CF834511 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.981e-13
Identity = 44/130 (33.85%), Postives = 58/130 (44.62%), Query Frame = 1
Query:   19 KQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLK 408
            K+   + A  R    ++TG S   C++          G+ + YLGR W  YSRTV     I D I P GWS+W      + + +GEY  RG GA    RV W         +E K F   E I G  WL+
Sbjct:  262 KRYGAIAAHHRDSETEDTGFSFVNCDI---------SGTGQIYLGRAWGNYSRTVYSNCFIADIITPVGWSDWKHPERQRKVMFGEYNCRGRGAERGGRVPW---SKTLTRDEVKPFLGREFIYGDQWLR 379          
BLAST of CF834511 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 38/97 (39.18%), Postives = 51/97 (52.58%), Query Frame = 1
Query:   34 VTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKW 324
            +TAQGRT+ N   G     C V          G  ++YLGR W+ YSR +   S++ D +DP GW EW+     K L Y E+   G G+ TS+R KW
Sbjct:  212 ITAQGRTNANDANGFVFINCLV---------HGFGKAYLGRAWRPYSRVIFYNSNLTDVVDPLGWWEWNYQGYEKQLTYAEHGCFGSGSNTSRRAKW 299          
BLAST of CF834511 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.281e-11
Identity = 40/129 (31.01%), Postives = 61/129 (47.29%), Query Frame = 1
Query:   34 VTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGV 420
            +TAQGR   ++ +G S   C++  S ++          LGR W  Y+  V   +++   I P GW+ W      KT+ +GE+   GPGA   +RV +     +TD  EA  F     I G  WL+ T +
Sbjct:  274 ITAQGRQSEDEQSGFSFVNCKIDGSGEI---------LLGRAWGAYATVVFSNTYMSGIITPEGWNNWGDSTKEKTVTFGEHKCYGPGADYKERVLFG--KQLTD-SEASSFIDVSFIDGDEWLRHTNI 390          
BLAST of CF834511 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 39/124 (31.45%), Postives = 58/124 (46.77%), Query Frame = 1
Query:   34 VTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWL 405
            +TA G+      TG     C++          GS R +LGR W+ Y+R +  ++++   +   GW++       +T+YYGE+   GPGA  SKRV    Y  +    EA  FT    I G  WL
Sbjct:  222 ITANGKDTLKDRTGFVFVNCKIT---------GSARVWLGRAWRPYARVIFSKTYMSRVVSLDGWNDMGDPKTQRTVYYGEHRCYGPGANHSKRVT---YAKLLSDVEAAPFTNISFIDGEEWL 333          
BLAST of CF834511 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.726e-11
Identity = 41/125 (32.80%), Postives = 62/125 (49.60%), Query Frame = 1
Query:   34 VTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLK 408
            VTA GR+  ++N+G S   C +          G+   +LGR W+ YSR V + + + D I P GW+ ++      T++YGEY   GPGA  SKR   P    + + + A     +  I G  WL+
Sbjct:  277 VTANGRSSKDENSGFSFVNCTI---------GGTGHVWLGRAWRPYSRVVFVSTTMTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKRA--PYVQKLNETQVALLINTS-FIDGDQWLQ 389          
The following BLAST results are available for this feature:
BLAST of CF834511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PME_BRACM1.045e-2136.99Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME_MEDSA1.845e-1836.91Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME56_ARATH3.147e-1851.95Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME11_ARATH5.024e-1634.85Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME53_ARATH2.757e-1437.60Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME62_ARATH3.981e-1333.85Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME55_ARATH1.976e-1239.18Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PME15_ARATH1.281e-1131.01Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]
PME14_ARATH2.853e-1131.45Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PME8_ARATH3.726e-1132.80Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834511 ID=CF834511; Name=CF834511; organism=Citrus sinensis; type=EST; length=533bp
GCCAGAAAGCCCCTTTTAAAGCAATCCAACATGGTCACAGCCCAAGGACG
GACCGACCCAAATCAAAACACAGGGACTTCGATCCAAAAATGTGAAGTCA
TAGCAAGCTCAGATCTGGAGCCCGTAAAGGGCTCGATCCGTTCGTACTTG
GGCCGGCCTTGGAAAGAATACTCGAGAACAGTTGTAATGCAGTCACACAT
CGGGGATCATATCGATCCAGCTGGATGGTCAGAATGGAGTGGAGATTTTG
CACTGAAGACACTGTATTATGGGGAGTATCTGAATAGAGGGCCAGGTGCT
GGGACTAGCAAAAGAGTGAAATGGCCTGGCTATCACGTTATTACAGACCC
AGAAGAAGCAAAAAAATTTACAGTAGCTGAGCTTATCGGAGGAGGGTCGT
GGTTGAAATCAACTGGAGTTGCTTATACTGAGGGGCTGTGATGTCAGCTC
AGCATATATCTTTTAAGCTTGTATTTGCCACTGCTTTCTATCAGTTGAAT
AATGAATGAATCCGAGTAACGTGCTGTACTAGT
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