CF834511

Overview
NameCF834511
Unique NameCF834511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF834511 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 41/131 (31.30%), Postives = 57/131 (43.51%), Query Frame = 1 
Query:   34 VTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGVAY 426
            +TAQGR  P    G   + C V+         GS ++ LGR WK YSR +  +S   D+I P GW  W        + + E+   G GA TSKRV W         ++  +FT    I    WL    + +
Sbjct:  221 ITAQGRDSPTDKGGFVFKDCTVM---------GSGKALLGRAWKSYSRVIFYRSMFSDNILPIGWDAWKAKGQEGHITFVEFGCTGVGADTSKRVPW---LTKASEKDVLQFTNLTFIDEEGWLSRLPIKF 339
The following BLAST results are available for this feature:
BLAST of CF834511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PME10_ARATH8.301e-1131.30Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834511 ID=CF834511; Name=CF834511; organism=Citrus sinensis; type=EST; length=533bp
GCCAGAAAGCCCCTTTTAAAGCAATCCAACATGGTCACAGCCCAAGGACG
GACCGACCCAAATCAAAACACAGGGACTTCGATCCAAAAATGTGAAGTCA
TAGCAAGCTCAGATCTGGAGCCCGTAAAGGGCTCGATCCGTTCGTACTTG
GGCCGGCCTTGGAAAGAATACTCGAGAACAGTTGTAATGCAGTCACACAT
CGGGGATCATATCGATCCAGCTGGATGGTCAGAATGGAGTGGAGATTTTG
CACTGAAGACACTGTATTATGGGGAGTATCTGAATAGAGGGCCAGGTGCT
GGGACTAGCAAAAGAGTGAAATGGCCTGGCTATCACGTTATTACAGACCC
AGAAGAAGCAAAAAAATTTACAGTAGCTGAGCTTATCGGAGGAGGGTCGT
GGTTGAAATCAACTGGAGTTGCTTATACTGAGGGGCTGTGATGTCAGCTC
AGCATATATCTTTTAAGCTTGTATTTGCCACTGCTTTCTATCAGTTGAAT
AATGAATGAATCCGAGTAACGTGCTGTACTAGT
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