CF834513

Overview
NameCF834513
Unique NameCF834513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.063e-86
Identity = 155/192 (80.73%), Postives = 171/192 (89.06%), Query Frame = -3
Query:  237 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSV 812
            VTFRGP+DTHLDSLVGQALFGDG AA+I+GADP   +E+P+++LVST+QTILPDSDG+IDGHLRE GLTFHLLKDVPGLISKNI+KSL+EAF PLGISDWNSIFWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKKS E+   T+GEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  195 VTFRGPSDTHLDSLVGQALFGDGAAAIIIGADPIPEIEKPMFELVSTAQTILPDSDGSIDGHLREAGLTFHLLKDVPGLISKNIQKSLTEAFKPLGISDWNSIFWIAHPGGPAILDQVEEKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKKSAEDGLETAGEGLEWGVLFGFGPGLTVETVVLHSV 386          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHS1_CASGL (Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.694e-86
Identity = 157/192 (81.77%), Postives = 170/192 (88.54%), Query Frame = -3
Query:  237 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSV 812
            VTFRGP+DTHLDSLVGQALFGDG AA+IVGADP   VE+PL+++VST+QTILPDSDGAIDGHLREVG+TFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMR+KS E+   T+GEGLDWGVLFGFGPGLTVETVVLHS+
Sbjct:  196 VTFRGPSDTHLDSLVGQALFGDGAAAIIVGADPLPEVEKPLFEVVSTAQTILPDSDGAIDGHLREVGVTFHLLKDVPGLISKNIEKSLVEAFQPLGISDWNSLFWIAHPGGPAILDQVEEKLALKPEKLGATRHVLSEYGNMSSACVLFILDEMRRKSAEKGLKTTGEGLDWGVLFGFGPGLTVETVVLHSL 387          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHS1_CAMSI (Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.519e-86
Identity = 156/192 (81.25%), Postives = 170/192 (88.54%), Query Frame = -3
Query:  237 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSV 812
            VTFRGP+DTHLDSLVGQALFGDG AA+IVG+DP   VE+PL++LVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL+EAF PLGISDWNS+FWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKKS  +   T+GEGL+WGVLFGFGPGLTVETVVLHS+
Sbjct:  196 VTFRGPSDTHLDSLVGQALFGDGAAAIIVGSDPIPEVEKPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLAEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKSAADGLKTTGEGLEWGVLFGFGPGLTVETVVLHSL 387          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHSY_HYPAN (Chalcone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.024e-85
Identity = 154/194 (79.38%), Postives = 171/194 (88.14%), Query Frame = -3
Query:  231 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVPI 812
            VTFRGP DTHLDSLVGQALFGDG AA+I+G+DP   VE+PL++LVS +QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKN+EKSL+EAF PLGISDWNS+FWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMR+KS E+   T+GEG++WGVLFGFGPGLTVETVVLHSV I
Sbjct:  196 VTFRGPTDTHLDSLVGQALFGDGAAAIIIGSDPIPEVEKPLFELVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLSLKPEKLRATRHVLSEYGNMSSACVLFILDEMRRKSKEDGLKTTGEGIEWGVLFGFGPGLTVETVVLHSVAI 389          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.337e-85
Identity = 154/192 (80.21%), Postives = 171/192 (89.06%), Query Frame = -3
Query:  237 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSV 812
            VTFRGP+DTHLDSLVGQALFGDG AAVI+GADP   VE+PL++LVS +QT+LPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL+EA  P+GISDWNS+FWIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDE+R+KS E+   T+GEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:   39 VTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPVPEVEKPLFELVSAAQTVLPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLNEALKPIGISDWNSLFWIAHPGGPAILDQVEAKLALKPEKLEATRQVLSDYGNMSSACVLFILDEVRRKSAEKGLETTGEGLEWGVLFGFGPGLTVETVVLHSV 230          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHSY_RAPSA (Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.746e-85
Identity = 154/195 (78.97%), Postives = 173/195 (88.72%), Query Frame = -3
Query:  231 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVPI 812
            VTFRGP+DTHLDSLVGQALF DG AA+IVG+DPD S  E+P++++VS +QTILPDSDGAIDGHLREVG+TFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILD VE          +ATR VLSEYGNMSSACVLFILDEMR+KS+++  AT+GEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  200 VTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDVSAGEKPIFEMVSAAQTILPDSDGAIDGHLREVGITFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDDVEKKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRRKSLDDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPV 394          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHS1_SINAL (Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.281e-85
Identity = 156/195 (80.00%), Postives = 172/195 (88.21%), Query Frame = -3
Query:  231 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVPI 812
            VTFRGP+DTHLDSLVGQALF DG AA+IVG+D D S  E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILD VE          +ATR VLSEYGNMSSACVLFILDEMR+KSVE+  AT+GEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  201 VTFRGPSDTHLDSLVGQALFSDGAAALIVGSDADISAGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDDVEKKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRRKSVEDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPV 395          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHSJ_PETHY (Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=2 SV=2)

HSP 1 Score: 315.079 bits (806), Expect = 2.979e-85
Identity = 156/192 (81.25%), Postives = 168/192 (87.50%), Query Frame = -3
Query:  237 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSV 812
            VTFRGP DTHLDSLVGQALFGDG AA+I+G+DP   VERPL++LVS SQT+LPDS+GAIDGHLREVGLTFHLLKDVPGLISKNI+KSL EAF PLGISDWNSIFWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRK S +E   T+GEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  196 VTFRGPNDTHLDSLVGQALFGDGAAAIIIGSDPLPGVERPLFELVSASQTLLPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIQKSLVEAFQPLGISDWNSIFWIAHPGGPAILDQVELKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.979e-85
Identity = 151/193 (78.24%), Postives = 173/193 (89.64%), Query Frame = -3
Query:  234 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVP 812
            VTFRGP + HLDSLVGQALFGDG AAVI+G+DPD SVERPL+++VS +QTILPDS+GAIDGHL+EVGLTFHLLKDVP LI+KNIEK+L +AF+PL I+DWNSIFWIAHPGGPAILDQVEF         +A+R VLSEYGNMSSACVLFILDEMRKKS+++ K T+GEGL+WGVLFGFGPGLTVETVVLHS+P
Sbjct:  202 VTFRGPNEGHLDSLVGQALFGDGAAAVIIGSDPDLSVERPLFEMVSAAQTILPDSEGAIDGHLKEVGLTFHLLKDVPALIAKNIEKALIQAFSPLNINDWNSIFWIAHPGGPAILDQVEFKLGLREEKLRASRHVLSEYGNMSSACVLFILDEMRKKSIKDGKTTTGEGLEWGVLFGFGPGLTVETVVLHSLP 394          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHS2_SOLTU (Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.979e-85
Identity = 155/192 (80.73%), Postives = 170/192 (88.54%), Query Frame = -3
Query:  237 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSV 812
            VTF GP+DTHLDS+VGQALFGDG AA+I+G+DP   VERPL++LVS +QT+LPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNSIFWIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDEMRK S +E  +T+GEGLDWGVLFGFGPGLTVETVVLHSV
Sbjct:  196 VTFSGPSDTHLDSMVGQALFGDGAAAMIIGSDPLPEVERPLFELVSAAQTLLPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLIEAFQPLGISDWNSIFWIAHPGGPAILDQVELKLGLKPEKLQATRQVLSDYGNMSSACVLFILDEMRKASSKEGLSTTGEGLDWGVLFGFGPGLTVETVVLHSV 387          
The following BLAST results are available for this feature:
BLAST of CF834513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
CHS1_CITSI2.063e-8680.73Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHS1_CASGL2.694e-8681.77Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2... [more]
CHS1_CAMSI3.519e-8681.25Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 P... [more]
CHSY_HYPAN1.024e-8579.38Chalcone synthase OS=Hypericum androsaemum PE=1 SV... [more]
CHSY_MALDO1.337e-8580.21Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
CHSY_RAPSA1.746e-8578.97Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 ... [more]
CHS1_SINAL2.281e-8580.00Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 S... [more]
CHSJ_PETHY2.979e-8581.25Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=... [more]
CHS3_GERHY2.979e-8578.24Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHS2_SOLTU2.979e-8580.73Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834513 ID=CF834513; Name=CF834513; organism=Citrus sinensis; type=EST; length=814bp
TTTTTTTTTTTTTACAAATTTACTACTTTCTCAAATTCCCAAGACTTTAT
GCATAAACACAAAGCGTTGCCCAGGCTTTGGTGACGTCATAAGAGAAAAG
GCACGATGCCTTAAACTCAATTGACAAAACTAAACCTTCACACGATCAAC
CAATAACTCAACTGTGAAAGCATACAACATAAAGTTACTGAACTACTAAA
CATACTGATGGAGTTCTCACTTCAAGCTTTGATGGGGACACTGTGCAGCA
CAACGGTCTCGACGGTGAGCCCCGGCCCGAACCCGAACAGCACACCCCAA
TCAAGCCCTTCGCCGGAGGTGGCTTTCGCTTCCTCAACAGACTTCTTTCT
CATCTCGTCAAGGATGAACAAGACACAAGCGCTTGACATGTTACCGTACT
CACTCAACACTTGACGTGTGGCCTTCAGCTTCTCCCCTTTGAGGCCCAGT
TTAAACTCCACTTGGTCCAGAATTGCGGGCCCACCGGGGTGAGCGATCCA
GAATATCGAGTTCCAATCGCTGATGCCAAGCGGGGCGAACGCTTCAGACA
GGCTTTTCTCTATATTCTTTGAGATCAAGCCGGGGACGTCTTTAAGCAAA
TGGAAAGTGAGACCGACTTCGCGCAAGTGTCCGTCAATTGCACCGTCAGA
GTCAGGGAGGATCGTCTGCGAAGTCGACACGAGCTGATACAACGGACGCT
CGACCGACGTGTCAGGATCGGCACCCACGATCACAGCAGCATCACCATCA
CCGAACAAAGCCTGGCCCACAAGAGAATCAAGATGAGTATCGGCAGGGCC
GCGGAAAGTGACTG
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