CF834514

Overview
NameCF834514
Unique NameCF834514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834514 vs. ExPASy Swiss-Prot
Match: CHSJ_PETHY (Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 2
Query:  446 AENNKGARVLVGCSEITAVTFRGPADTHLDSLVGQAL 556
            AENNKGARVLV CSEITAVTFRGP DTHLDSLVGQAL
Sbjct:  178 AENNKGARVLVVCSEITAVTFRGPNDTHLDSLVGQAL 214          
BLAST of CF834514 vs. ExPASy Swiss-Prot
Match: CHSA_PETHY (Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 2
Query:  446 AENNKGARVLVGCSEITAVTFRGPADTHLDSLVGQAL 556
            AENNKGARVLV CSEITAVTFRGP DTHLDSLVGQAL
Sbjct:  178 AENNKGARVLVVCSEITAVTFRGPNDTHLDSLVGQAL 214          
BLAST of CF834514 vs. ExPASy Swiss-Prot
Match: CHS3_SINAL (Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 2
Query:  446 AENNKGARVLVGCSEITAVTFRGPADTHLDSLVGQAL 556
            AENN+GARVLV CSEITAVTFRGP+DTHLDSLVGQAL
Sbjct:  183 AENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQAL 219          
BLAST of CF834514 vs. ExPASy Swiss-Prot
Match: CHS3_CAMSI (Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 2
Query:  446 AENNKGARVLVGCSEITAVTFRGPADTHLDSLVGQAL 556
            AENNKGARVLV CSEITAVTFRGP+DTHLDSLVGQ+L
Sbjct:  178 AENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQSL 214          
BLAST of CF834514 vs. ExPASy Swiss-Prot
Match: CHS1_SINAL (Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 2
Query:  446 AENNKGARVLVGCSEITAVTFRGPADTHLDSLVGQAL 556
            AENN+GARVLV CSEITAVTFRGP+DTHLDSLVGQAL
Sbjct:  183 AENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQAL 219          
BLAST of CF834514 vs. ExPASy Swiss-Prot
Match: CHS1_GERHY (Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 2
Query:  446 AENNKGARVLVGCSEITAVTFRGPADTHLDSLVGQAL 556
            AENNKGARVLV CSEITAVTFRGP DTHLDSLVGQAL
Sbjct:  181 AENNKGARVLVVCSEITAVTFRGPNDTHLDSLVGQAL 217          
BLAST of CF834514 vs. ExPASy Swiss-Prot
Match: CHS1_CASGL (Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 2
Query:  446 AENNKGARVLVGCSEITAVTFRGPADTHLDSLVGQAL 556
            AENN+GARVLV CSEITAVTFRGP+DTHLDSLVGQAL
Sbjct:  178 AENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQAL 214          
BLAST of CF834514 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 2
Query:  446 AENNKGARVLVGCSEITAVTFRGPADTHLDSLVGQAL 556
            AENN+GARVLV CSEITAVTFRGP DTHLDSLVGQAL
Sbjct:  180 AENNRGARVLVVCSEITAVTFRGPVDTHLDSLVGQAL 216          
BLAST of CF834514 vs. ExPASy Swiss-Prot
Match: CHSY_PINSY (Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 2
Query:  446 AENNKGARVLVGCSEITAVTFRGPADTHLDSLVGQAL 556
            AENN+GARVLV CSEITAVTFRGP+DTHLDS+VGQAL
Sbjct:  183 AENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQAL 219          
BLAST of CF834514 vs. ExPASy Swiss-Prot
Match: CHSY_PINST (Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 2
Query:  446 AENNKGARVLVGCSEITAVTFRGPADTHLDSLVGQAL 556
            AENN+GARVLV CSEITAVTFRGP+DTHLDS+VGQAL
Sbjct:  183 AENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQAL 219          
The following BLAST results are available for this feature:
BLAST of CF834514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
CHSJ_PETHY5.713e-1294.59Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=... [more]
CHSA_PETHY5.713e-1294.59Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=... [more]
CHS3_SINAL5.713e-1291.89Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 S... [more]
CHS3_CAMSI5.713e-1291.89Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 P... [more]
CHS1_SINAL5.713e-1291.89Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 S... [more]
CHS1_GERHY5.713e-1294.59Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=... [more]
CHS1_CASGL5.713e-1291.89Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2... [more]
CHS3_RUTGR7.462e-1291.89Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHSY_PINSY9.746e-1289.19Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 ... [more]
CHSY_PINST9.746e-1289.19Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834514 ID=CF834514; Name=CF834514; organism=Citrus sinensis; type=EST; length=601bp
CGAGTTTTTTTCTTTTAATTATTAACAAATGTCTGGATCTTGATATATAT
ACCTCGGATCAGACGGATATACTTTAAGCTTACATATCACATATGTTAAA
ACTGCAAAAAACTTGAAAAAAGCTAACCGATTATTCAAAACACGACCCAA
AATAAAAGAACTCTTAAAAACTTATAACCGACTTATCAAAAGTGAAGAAA
GGCTAACACAAAACCGACTTGATTAACTGACATTATCCTAAAATTAAAGA
AGCATGAAATGAAATTGTAGAAATATCAAGGGTGAAGTAGGCCACCACCA
CAGTTACTGCCACTTCCACCCCCGAGACCCCCTCCGGCACCTCCACCAAA
TCCGCCACCAGCGCCGCCACCGATACCACTGACAAGGCCACCACCTGAAC
CACCGCCGAGGCCACCTCCGGCACCGCCTCCGAGGCCCCCGCTTGGCTGA
GAACAACAAGGGCGCTCGCGTTCTTGTTGGCTGTTCGGAGATCACGGCAG
TCACTTTCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAG
GCTTTGATCGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATCCTGA
C
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