CF834518

Overview
NameCF834518
Unique NameCF834518
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834518 vs. ExPASy Swiss-Prot
Match: IDI1_MACFA (Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.654e-15
Identity = 35/74 (47.30%), Postives = 58/74 (78.38%), Query Frame = -3 
Query:  305 HVTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 526
            +VT+NP+P+E+  + YV++E+LKELL+KA  GE  +K++PWF+++ + FLFKWWD+L    LN+ +D + IH++
Sbjct:  158 NVTLNPDPNEIKSFCYVSKEELKELLKKAANGE--IKITPWFQIIAETFLFKWWDNLNH--LNQFVDHEKIHRM 227
[Close]
BLAST of CF834518 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15
Identity = 35/74 (47.30%), Postives = 58/74 (78.38%), Query Frame = -3 
Query:  305 HVTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 526
            +VT+NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++   FLFKWWD+L    LN+ +D + I+++
Sbjct:  158 NVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 227
[Close]
BLAST of CF834518 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.285e-15
Identity = 35/74 (47.30%), Postives = 56/74 (75.68%), Query Frame = -3 
Query:  305 HVTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 526
            +VT+NP+P+E+  Y YV++E+LKE+L+K   GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH++
Sbjct:  158 NVTLNPDPNEIKSYCYVSKEELKEILKKEARGE--IKLTPWFKIIADAFLFKWWDNLNH--LSPFVDHEKIHRM 227
[Close]
BLAST of CF834518 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.285e-15
Identity = 35/74 (47.30%), Postives = 56/74 (75.68%), Query Frame = -3 
Query:  305 HVTVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 526
            +VT+NP+P+E+  Y YV +E+L+EL+ KA  GE  +K++PWF+++ D FLFKWWD+L +  LN  +D + IH++
Sbjct:  158 NVTLNPDPNEIKSYCYVTKEELEELIGKAAHGE--IKITPWFQIIADTFLFKWWDNLNR--LNLFVDHEKIHRM 227
The following BLAST results are available for this feature:
BLAST of CF834518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
IDI1_MACFA1.654e-1547.30Isopentenyl-diphosphate Delta-isomerase 1 OS=Macac... [more]
IDI1_HUMAN2.821e-1547.30Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]
IDI1_RAT6.285e-1547.30Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI1_BOVIN6.285e-1547.30Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834518 ID=CF834518; Name=CF834518; organism=Citrus sinensis; type=EST; length=747bp
TTTTTTTTTTTTTTAGAAGAAGCAGATTTTTATTTTTTTACTAAACCATA
TGTAATGTCAAAATTACAAACTTAACAATAAAATTCCATAAAAGCAGCAC
ATACGAAAAGATAAGGTAACGTCAACAACAAAATGCTAATCTGTGTAGAA
CTCTCGCATATCCAAATTTATTGGAATAAAGAAACCGGTGAGAAGATACT
GTGTACCCTTAATGTCTTGAAGAACTCTCAAATGCCCAAACTTATTGGAA
TACAGGTTCCGGCACACAAATACTGTGTTTCAAGGGCCTGCGGCTTTATT
AAGTCAACTTGTGAATGGTCTTCATGTCAATGACTTCGTTAAGGGTACCT
TTTTCGAGGTGATCCCACCACTTGAACAAGAAATTGTCCACAACCAGTCT
GAACCAAGGAGACAGCTTCAAACCTTCTTCTCCAGCATCTGCTTTCCTCA
AAAGCTCTTTTAACTGTTCCCGGTTGACATATTTATACTCGGCTACTTCA
TCAGGATTTGGGTTAACAGTGACGTGCAGAGCTTCGTGAGTTTGTTGAGG
GAGAAGGTGAAAAGTGAAGAACCGGAGGAAGTGGAACCGGGCATTGGGGA
GGACCAATCACCTGCCGCCACGAAGCGGATTTGTGCTGAATCTCGGCCGT
TAGTTGAGTGCATCGAGATCATACGGTCTCATAAATTTGGCTCCTTTTTC
GAACGCCTTGACGCTACTAAGGAAACACCCGATTACAGAAGCATTGT
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