CF834519

Overview
NameCF834519
Unique NameCF834519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834519 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:  592 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 753
            +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL L
Sbjct:   20 TDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLAL 73
[Close]
BLAST of CF834519 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:  592 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 753
            +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL L
Sbjct:   20 NDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLAL 73
[Close]
BLAST of CF834519 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:  592 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 753
            +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL L
Sbjct:   20 TDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLAL 73
The following BLAST results are available for this feature:
BLAST of CF834519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RUB2_ARATH8.685e-1261.11NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_CAEEL1.481e-1157.41NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB3_ORYSJ4.310e-1155.56NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834519 ID=CF834519; Name=CF834519; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTTTTTTTTAAGAAAAAAAAGTCTTTTATTTATGCTGATACCCTAT
TCTAATTTCAAGGGTCACTGTTTACCAACTGAGTTTCATCAGCTTCCACT
CCAGATTCTTGATATGCCATTCTAATTTCAGGTGTCATTATTTACCAATT
GAGTTTCACCAGCTTCCACTCCAGATTATTCACCGACACACCAACTTCAT
CTAAAGAAAAACCCCCAGTTGAGAGACTGGTATTAGGGTATTCAATCCCA
TTGGCACCTACGATCTTCCAGCCCATGTCAAACTGATAGGCTATTGGCTC
GAAGCCACAGCACTCCACAACAGCTAGTGTTGACTCACCTCCAACATAAG
GCACGCCAAAGCATCCAGAGGCCAGGCCTATAGTCCCTCTCCGAGAGCAG
TCATTACACTGAAGTGAAACCTTGGATCCAACGAAAAGAGGGATCCATTT
GCTGTGCTCCAAACGGCAGCCCTCTGCGGTGCACTTGAACTTCAGCCAGT
ACGGGAATTCCGTATCCTCAAAACCTGGTTCCATTCTCGCAACTTTTTCA
AGTTGAGCGGAAATTTTCAGAGAAAAGCGCTCGACTCCTCATCGGACACC
ATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGA
CCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCC
TAGCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGT
CTC
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