CF834520

Overview
NameCF834520
Unique NameCF834520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834520 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   20 TDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CF834520 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   20 TDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CF834520 vs. ExPASy Swiss-Prot
Match: RS27B_SCHPO (40S ribosomal protein S27b OS=Schizosaccharomyces pombe GN=ubi5 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = -2
Query:  201 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGL 341
            LAVL++YKV+D G V+RLR+ECPN  CGA TFMANH DR YCG+C L
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHL 68          
BLAST of CF834520 vs. ExPASy Swiss-Prot
Match: RS27A_SCHPO (40S ribosomal protein S27a OS=Schizosaccharomyces pombe GN=ubi3 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = -2
Query:  201 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGL 341
            LAVL++YKV+D G V+RLR+ECPN  CGA TFMANH DR YCG+C L
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHL 68          
BLAST of CF834520 vs. ExPASy Swiss-Prot
Match: RS27A_CAEBR (40S ribosomal protein S27a OS=Caenorhabditis briggsae GN=ubl-1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = -2
Query:  207 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKC 341
            LAVL++YKVD++GK+ RLRKEC    CG G FMA H +RHYCG+C
Sbjct:   24 LAVLKYYKVDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRC 68          
BLAST of CF834520 vs. ExPASy Swiss-Prot
Match: RS27A_CAEEL (40S ribosomal protein S27a OS=Caenorhabditis elegans GN=ubl-1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = -2
Query:  207 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKC 341
            LAVL++YK+D++GK+ RLRKEC    CG G FMA H +RHYCG+C
Sbjct:   24 LAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRC 68          
BLAST of CF834520 vs. ExPASy Swiss-Prot
Match: RS37_YEAST (40S ribosomal protein S31 OS=Saccharomyces cerevisiae GN=UBI3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = -2
Query:  195 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLPY 341
            LAVL +YKVD  GKV +LR+EC N  CGAG F+ANH DR YCGKC   Y
Sbjct:   24 LAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVY 72          
BLAST of CF834520 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:   20 TDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
BLAST of CF834520 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:   20 TDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76          
BLAST of CF834520 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 29/58 (50.00%), Postives = 43/58 (74.14%), Query Frame = -2
Query:  408 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 581
            +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG+
Sbjct:   20 NDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77          
The following BLAST results are available for this feature:
BLAST of CF834520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
NEDD8_HUMAN1.159e-1256.14NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN1.159e-1256.14NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RS27B_SCHPO1.514e-1270.2140S ribosomal protein S27b OS=Schizosaccharomyces ... [more]
RS27A_SCHPO1.514e-1270.2140S ribosomal protein S27a OS=Schizosaccharomyces ... [more]
RS27A_CAEBR1.514e-1264.4440S ribosomal protein S27a OS=Caenorhabditis brigg... [more]
RS27A_CAEEL1.977e-1262.2240S ribosomal protein S27a OS=Caenorhabditis elega... [more]
RS37_YEAST2.582e-1265.3140S ribosomal protein S31 OS=Saccharomyces cerevis... [more]
RUB3_ARATH5.752e-1254.39NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
NEDD8_DICDI9.811e-1254.39NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
UBL1_SCHPO2.186e-1150.00Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834520 ID=CF834520; Name=CF834520; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTAAAATTTAAAACAGATAACCATTTAATTAAAAC
GCTCCAGCAAACAAGTATATAGTCAAACAAAATTACGAAAGAGTCATAAT
TTTTGAACCACAAAAACCATAGTAATTAATACTAATTAAAAATAGCAAAA
CAACCACCTAATCTCGATCAATCACCGCCAGCCTTCTGGTAAACATAGGG
GAGTCCACACTTGCCGCAGTAGTGCCTGTCAAAGTGGTTAGCCATGAAGG
TGCCGGCTCCACACTCAGCATTCGGACACTCCTTCCTCAGCCTCTGGACC
TTTCCAGAATCATCGACCTTGTAAAACTGCAAGACGGCGAGCTTGACCTT
CTTCTTCTTGTGCTTGATCTTTTTCGGCTTGGTGTAGGTCTTCTTCTTAC
GCTTCTTCGCGCCACCACGGAGACGGAGGACGAGGTGGAGTGTTGACTCC
TTTTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCC
GGCGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGA
TCTTGGCCTTGACATTGTCGATGGTGTCCGATGAGGAGTCGAGCGCTTTT
CTCTGAAAATTTCCGCTCAACTTGAAAAAGTTGCGAGAATGGAACCAGGT
TTTGAGGATACGGAATTCCCGTACTGGCTGAAGTTCAAGTGCACCG
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