CF834523

Overview
NameCF834523
Unique NameCF834523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_PHANO (Putative DNA helicase INO80 OS=Phaeosphaeria nodorum GN=INO80 PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.065e-22
Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            YK+   DG+TK  DR   V DFQ      +FLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+T GT+EE+I ++ + K
Sbjct: 1440 YKYCRLDGSTKLEDRRDTVADFQSDPTIFVFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITSGTIEERIRKRALQK 1539          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_USTMA (Putative DNA helicase INO80 OS=Ustilago maydis GN=INO80 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.309e-22
Identity = 51/95 (53.68%), Postives = 68/95 (71.58%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 286
            YK+L  DG +K SDR  +V D+Q      IFLL+++ GGLG+ LT AD VI  D  WNPS D+Q++DRA+R+GQ K V VYRL+T GT++E+I R
Sbjct: 1620 YKYLRLDGASKISDRRDMVTDWQTKPELFIFLLSTRAGGLGINLTAADTVIFYDHDWNPSNDSQAMDRAHRLGQTKQVTVYRLITKGTIDERIVR 1714          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_GIBZE (Putative DNA helicase INO80 OS=Gibberella zeae GN=INO80 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.309e-22
Identity = 51/100 (51.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            YK+   DG+TK  DR   V+DFQ      IFLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ K V VYRL+T GT+EE+I ++ + K
Sbjct: 1667 YKYCRLDGSTKLEDRRDTVHDFQTRPEIFIFLLSTRAGGLGINLTTADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRAMQK 1766          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD26_MOUSE (Putative DNA repair and recombination protein RAD26-like OS=Mus musculus GN=Rad26l PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 2
Query:   20 DGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 352
            DG+TK+ +R+KIV +F       I L+++  GGLGL    A+ VI+ DP WNP+ D Q+VDRAYRIGQ +DV V RL++ GTVEE +Y +Q++K  L       +   RYF
Sbjct:  553 DGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYF 663          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_NEUCR (Putative DNA helicase ino-80 OS=Neurospora crassa GN=ino-80 PE=3 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            YK+   DG+TK  DR   V DFQ      IFLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ K V VYRL+T GT+EE+I ++ + K
Sbjct: 1739 YKYCRLDGSTKLEDRRDTVADFQTRPEIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRAMQK 1838          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD54_YEAST (DNA repair and recombination protein RAD54 OS=Saccharomyces cerevisiae GN=RAD54 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 53/127 (41.73%), Postives = 81/127 (63.78%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI-RYFSQQDLREL 376
            Y  +  DGT   + R K+V+ F + +    IFLL+S+ GG G+ L  A+R+I++DP WNP+ D Q++ R +R GQKKD  +YR ++ GT+EEKI+++Q  K  L     + KE + R FS  +LR+L
Sbjct:  697 YSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVERLFSSDNLRQL 823          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD54_CHICK (DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus GN=RAD54L PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 52/130 (40.00%), Postives = 80/130 (61.54%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI-RYFSQQDLRELLSL 385
            Y ++  DGT     R K+V  F        IF+L+S+ GG GL L  A+R+++ DP WNP+ D Q++ R +R GQKK   +YRL++ GT+EEKI+++Q  K  L     + ++ + R+FS  +L+EL SL
Sbjct:  527 YLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHFSLGELKELFSL 656          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_NEOFI (Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            YK+   DG+TK  DR   V DFQ+     +FLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+T GT+EE+I ++ + K
Sbjct: 1459 YKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQK 1558          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_ASPTN (Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ino80 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            YK+   DG+TK  DR   V DFQ+     +FLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+T GT+EE+I ++ + K
Sbjct: 1440 YKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQK 1539          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_ASPOR (Putative DNA helicase ino80 OS=Aspergillus oryzae GN=ino80 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            YK+   DG+TK  DR   V DFQ+     +FLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+T GT+EE+I ++ + K
Sbjct: 1257 YKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQK 1356          
The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
INO80_PHANO4.065e-2249.00Putative DNA helicase INO80 OS=Phaeosphaeria nodor... [more]
INO80_USTMA5.309e-2253.68Putative DNA helicase INO80 OS=Ustilago maydis GN=... [more]
INO80_GIBZE5.309e-2251.00Putative DNA helicase INO80 OS=Gibberella zeae GN=... [more]
RAD26_MOUSE9.055e-2246.85Putative DNA repair and recombination protein RAD2... [more]
INO80_NEUCR9.055e-2251.00Putative DNA helicase ino-80 OS=Neurospora crassa ... [more]
RAD54_YEAST1.183e-2141.73DNA repair and recombination protein RAD54 OS=Sacc... [more]
RAD54_CHICK1.183e-2140.00DNA repair and recombination protein RAD54-like (F... [more]
INO80_NEOFI1.183e-2149.00Putative DNA helicase ino80 OS=Neosartorya fischer... [more]
INO80_ASPTN1.183e-2149.00Putative DNA helicase ino80 OS=Aspergillus terreus... [more]
INO80_ASPOR1.183e-2149.00Putative DNA helicase ino80 OS=Aspergillus oryzae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bp
TTACAAGTTTCTCCTTTTTGATGGTACCACAAAAGCTAGTGACAGAGTGA
AGATTGTTAATGATTTTCAAGAGGGTGACGTGGCTCCTATATTTCTTTTG
ACATCTCAAGTTGGGGGTCTAGGCCTCACACTTACTAAAGCAGACCGTGT
GATTGTGGTGGATCCTGCTTGGAATCCAAGTACTGATAATCAAAGCGTTG
ATCGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTA
ATGACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAA
AGGCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATT
TTAGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTT
GATGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCA
CAACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAG
GTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGA
GTGCAAGTAGTGCAGGAAGAACAGGAAGTGACAAGGAGAAAAGGAACTGC
ATTTGTTGGTAATTTGTCATCTAGCTACCTGGTTGCACGAAACGTCGATG
GGGCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCT
TCTTCCCCAATAACTGAAGCTAAATTGAAAGAGTCTGATATCAAG
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