CF834523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.425e-16 Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 2 Query: 5 KFLLFDGTTKASDRVKIVNDFQEGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI----YRK-----QIFKGGLFKTATEHKEQ 340 K+L DG TK+ +R +++ F D + F+L+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQK +V + RL+T +VEE I Y+K ++ + G F + +EQ Sbjct: 1129 KYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQ 1250
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: YWQA_BACSU (Uncharacterized ATP-dependent helicase ywqA OS=Bacillus subtilis GN=ywqA PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16 Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 2 Query: 20 DGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385 +G+ +R +V FQ + P +L+ + GG GL LT A+ VI D WNP+ +NQ+ DRAYRIGQ++ V V++++T GT+EEKI K L + + I S Q+L EL +L Sbjct: 797 NGSLSKQERDTLVEKFQRKEY-PTLILSLKAGGTGLNLTAANHVIHYDRWWNPAVENQATDRAYRIGQERFVHVHKMITTGTIEEKIDVMLESKQTLNDQIIQSENWITELSTQELEELFTL 917
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: TTF2_HUMAN (Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16 Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = 2 Query: 8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHK-EQIRYFSQQDLRELLSL 385 + DG+ R+ +V F + L++ GG+GL LT + + ++D WNPS ++Q+ DR YR+GQ+KDVV++R + GTVEEKI + Q K L K E + + DLR L + Sbjct: 1036 YATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGESVTKLTLADLRVLFGI 1162
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.266e-15 Identity = 45/125 (36.00%), Postives = 72/125 (57.60%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLREL 376 ++FL FDG R K++ +F E I L++ + GG+GL LT A V ++DP WNP+ + Q++ R +RIGQK+ V V R + TVEE++ + Q K + A E++R ++L+ L Sbjct: 1152 FEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGALT-DEEVRSARLEELKML 1275
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.266e-15 Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289 Y++ DG T DR + F + G +FLL+++ GGLG+ L AD V++ D WNP D Q+ DRA+RIGQKK+V V+R T T+EEK+ + Sbjct: 573 YQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIER 669
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_USTMA (Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.654e-15 Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289 Y++L DG TK R + F F+L+++ GGLG+ LT AD V+ D WN + + Q +DRA+RIGQ +DV +YR +T T+EE + RK Sbjct: 1574 YRYLRLDGATKVESRQALTEQFNRDARISAFILSTRSGGLGINLTGADTVLFYDLDWNAAIEAQCMDRAHRIGQTRDVHIYRFVTEHTIEENMLRK 1669
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SSL1_CAEEL (Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4) HSP 1 Score: 83.1889 bits (204), Expect = 1.654e-15 Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQD-LREL 376 Y++ DGTT R ++ F F+L+++ GG+G+ LT AD VI D WNP+ D Q+ DR +RIGQ ++V +YRL++ T+EE I RK K L + A + +F Q D +R+L Sbjct: 1229 YQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRKATQKRRLGELAIDEAGFTPEFFKQSDSIRDL 1355
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: YG42_SCHPO (Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe GN=SPBC23E6.02 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15 Identity = 44/124 (35.48%), Postives = 75/124 (60.48%), Query Frame = 2 Query: 5 KFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLREL 376 K+L++ G ++R + + +F+ + L++ + G +GL LT A+ VI++DP WNP + Q+VDRA+RIGQ K V + R++T T+EE++ Q K L +A K +R S+ + +EL Sbjct: 909 KYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLALQDRKRELIDSALGEK-GLREISRLNTKEL 1031
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15 Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 Y++ DG T +R +N + E + +F+L+++ GGLG+ L AD VI+ D WNP D Q++DRA+RIGQ K V V+R +T TVEE+I + K Sbjct: 523 YEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMK 623
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15 Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 Y++ DG T +R +N + E + +F+L+++ GGLG+ L AD VI+ D WNP D Q++DRA+RIGQ K V V+R +T TVEE+I + K Sbjct: 524 YEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMK 624 The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 169
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bpback to top |