CF834523

Overview
NameCF834523
Unique NameCF834523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.425e-16
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 2
Query:    5 KFLLFDGTTKASDRVKIVNDFQEGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI----YRK-----QIFKGGLFKTATEHKEQ 340
            K+L  DG TK+ +R +++  F   D   + F+L+++ GGLGL L  AD VI+ D  WNP  D Q+ DRA+RIGQK +V + RL+T  +VEE I    Y+K     ++ + G F   +  +EQ
Sbjct: 1129 KYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQ 1250          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: YWQA_BACSU (Uncharacterized ATP-dependent helicase ywqA OS=Bacillus subtilis GN=ywqA PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 2
Query:   20 DGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385
            +G+    +R  +V  FQ  +  P  +L+ + GG GL LT A+ VI  D  WNP+ +NQ+ DRAYRIGQ++ V V++++T GT+EEKI      K  L     + +  I   S Q+L EL +L
Sbjct:  797 NGSLSKQERDTLVEKFQRKEY-PTLILSLKAGGTGLNLTAANHVIHYDRWWNPAVENQATDRAYRIGQERFVHVHKMITTGTIEEKIDVMLESKQTLNDQIIQSENWITELSTQELEELFTL 917          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: TTF2_HUMAN (Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.697e-16
Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHK-EQIRYFSQQDLRELLSL 385
            +   DG+     R+ +V  F       + L++   GG+GL LT  + + ++D  WNPS ++Q+ DR YR+GQ+KDVV++R +  GTVEEKI + Q  K  L K       E +   +  DLR L  +
Sbjct: 1036 YATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGESVTKLTLADLRVLFGI 1162          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.266e-15
Identity = 45/125 (36.00%), Postives = 72/125 (57.60%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLREL 376
            ++FL FDG      R K++ +F E     I L++ + GG+GL LT A  V ++DP WNP+ + Q++ R +RIGQK+ V V R +   TVEE++ + Q  K  +   A    E++R    ++L+ L
Sbjct: 1152 FEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGALT-DEEVRSARLEELKML 1275          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.266e-15
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289
            Y++   DG T   DR   +  F + G    +FLL+++ GGLG+ L  AD V++ D  WNP  D Q+ DRA+RIGQKK+V V+R  T  T+EEK+  +
Sbjct:  573 YQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIER 669          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_USTMA (Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.654e-15
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289
            Y++L  DG TK   R  +   F        F+L+++ GGLG+ LT AD V+  D  WN + + Q +DRA+RIGQ +DV +YR +T  T+EE + RK
Sbjct: 1574 YRYLRLDGATKVESRQALTEQFNRDARISAFILSTRSGGLGINLTGADTVLFYDLDWNAAIEAQCMDRAHRIGQTRDVHIYRFVTEHTIEENMLRK 1669          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SSL1_CAEEL (Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4)

HSP 1 Score: 83.1889 bits (204), Expect = 1.654e-15
Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQD-LREL 376
            Y++   DGTT    R  ++  F        F+L+++ GG+G+ LT AD VI  D  WNP+ D Q+ DR +RIGQ ++V +YRL++  T+EE I RK   K  L + A +       +F Q D +R+L
Sbjct: 1229 YQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRKATQKRRLGELAIDEAGFTPEFFKQSDSIRDL 1355          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: YG42_SCHPO (Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe GN=SPBC23E6.02 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15
Identity = 44/124 (35.48%), Postives = 75/124 (60.48%), Query Frame = 2
Query:    5 KFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLREL 376
            K+L++ G    ++R + + +F+      + L++ + G +GL LT A+ VI++DP WNP  + Q+VDRA+RIGQ K V + R++T  T+EE++   Q  K  L  +A   K  +R  S+ + +EL
Sbjct:  909 KYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLALQDRKRELIDSALGEK-GLREISRLNTKEL 1031          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            Y++   DG T   +R   +N + E +    +F+L+++ GGLG+ L  AD VI+ D  WNP  D Q++DRA+RIGQ K V V+R +T  TVEE+I  +   K
Sbjct:  523 YEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMK 623          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            Y++   DG T   +R   +N + E +    +F+L+++ GGLG+ L  AD VI+ D  WNP  D Q++DRA+RIGQ K V V+R +T  TVEE+I  +   K
Sbjct:  524 YEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMK 624          
The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
SNF2_YEAST7.425e-1640.16Transcription regulatory protein SNF2 OS=Saccharom... [more]
YWQA_BACSU9.697e-1639.34Uncharacterized ATP-dependent helicase ywqA OS=Bac... [more]
TTF2_HUMAN9.697e-1635.43Transcription termination factor 2 OS=Homo sapiens... [more]
SM3L3_ARATH1.266e-1536.00Putative SWI/SNF-related matrix-associated actin-d... [more]
ISW2_ORYSJ1.266e-1543.30Probable chromatin-remodeling complex ATPase chain... [more]
SWR1_USTMA1.654e-1541.67Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1[more]
SSL1_CAEEL1.654e-1537.80Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 ... [more]
YG42_SCHPO2.821e-1535.48Uncharacterized ATP-dependent helicase C23E6.02 OS... [more]
SMCA5_MOUSE2.821e-1541.58SWI/SNF-related matrix-associated actin-dependent ... [more]
SMCA5_HUMAN2.821e-1541.58SWI/SNF-related matrix-associated actin-dependent ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bp
TTACAAGTTTCTCCTTTTTGATGGTACCACAAAAGCTAGTGACAGAGTGA
AGATTGTTAATGATTTTCAAGAGGGTGACGTGGCTCCTATATTTCTTTTG
ACATCTCAAGTTGGGGGTCTAGGCCTCACACTTACTAAAGCAGACCGTGT
GATTGTGGTGGATCCTGCTTGGAATCCAAGTACTGATAATCAAAGCGTTG
ATCGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTA
ATGACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAA
AGGCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATT
TTAGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTT
GATGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCA
CAACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAG
GTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGA
GTGCAAGTAGTGCAGGAAGAACAGGAAGTGACAAGGAGAAAAGGAACTGC
ATTTGTTGGTAATTTGTCATCTAGCTACCTGGTTGCACGAAACGTCGATG
GGGCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCT
TCTTCCCCAATAACTGAAGCTAAATTGAAAGAGTCTGATATCAAG
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