CF834523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMRCD_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.072e-14 Identity = 37/95 (38.95%), Postives = 65/95 (68.42%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 286 +++L DG T+ S+R+ ++++F +FLL+++ GGLG+ LT A+ VI+ D NP D Q+ DR +R+GQ K+V+V +L++ GT+EE + + Sbjct: 895 HRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HLTF_RABIT (Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.829e-14 Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQ--EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385 + F DG+ RV+ + FQ E I LL+ + GG+GL L A RV ++DPAWNP+ ++Q DR +R+GQK++V++ + + +VEE + + Q K L A K+ Q + E+ +L Sbjct: 873 FVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQRFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELAAGAFGTKKNANEMKQAKINEIRTL 1002
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD5_CRYNE (DNA repair protein RAD5 OS=Cryptococcus neoformans GN=RAD5 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14 Identity = 41/131 (31.30%), Postives = 74/131 (56.49%), Query Frame = 2 Query: 5 KFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTS-QVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQ 394 ++L FDGT + R + +F P+ LL S + GG+GL LT A+ V ++D WN + + Q++DR +R+GQ K V V R + GTVE++I + Q K L + + + + + D++++ + ++ Sbjct: 1061 RWLRFDGTMSQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNLTMANYVFLMDTWWNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKTALVNASLSNGAKTKETTLADIKKIFGMDEE 1191
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14 Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289 Y + DG T +R + + + G +FLL+++ GGLG+ L AD VI+ D WNP D Q+ DRA+RIGQKK+V V+R T +EEK+ + Sbjct: 531 YLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIER 627
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HLTF_MOUSE (Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14 Identity = 43/134 (32.09%), Postives = 72/134 (53.73%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQ--EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR----KQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385 + F DG+ RV+ + FQ E I LL+ + GG+GL L A RV ++DPAWNP+ ++Q DR +R+GQK++V++ + + +VEE + + K+ G F T ++ ++R L+ L Sbjct: 870 FVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNTKRDLAAGAFGTKKTDANDMKQAKINEIRTLIDL 1003
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3) HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14 Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280 Y++ DG+ K R K ++ F + +FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+R+GQKK V++YR +T +VEE+I Sbjct: 627 YQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERI 720
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD1_YEAST (Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae GN=CHD1 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14 Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 2 Query: 8 FLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289 F DGT ++ R ++ F D +FLL+++ GGLG+ L AD V++ D WNP D Q++ RA+RIGQK V+VYRL++ TVEE++ + Sbjct: 738 FQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLER 832
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD1_DROME (Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14 Identity = 54/162 (33.33%), Postives = 81/162 (50.00%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY----RKQIF------------KGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEE 436 + F DG+ K R + ++ F EG FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQK V +YRL+T +VEE+I +K + + L K+ H F++ DL +L K G + +Q H++ Sbjct: 877 FPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRMDTTGRTVLDKSGNGHSSNSNPFNKDDLSAIL---KFGAEELFKDEQEHDD 1035
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD1L_DANRE (Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio GN=chd1l PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14 Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 328 Y + DG+ + +R + +F DV IFLL+++ GG+G+ LT AD VI VD +NP D Q+ RA+RIGQ + V V RL+ T+EE IY + + K L T E Sbjct: 377 YSYERLDGSVRGEERNLAIKNFSTKDVF-IFLLSTKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIE 484
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD3_CAEEL (Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 3.119e-14 Identity = 39/94 (41.49%), Postives = 58/94 (61.70%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280 YK+ DG+ R ++ + G +FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+R+GQK V++YR +T G+VEE+I Sbjct: 981 YKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERI 1074 The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 169
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bpback to top |