CF834523

Overview
NameCF834523
Unique NameCF834523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMRCD_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.072e-14
Identity = 37/95 (38.95%), Postives = 65/95 (68.42%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 286
            +++L  DG T+ S+R+ ++++F       +FLL+++ GGLG+ LT A+ VI+ D   NP  D Q+ DR +R+GQ K+V+V +L++ GT+EE + +
Sbjct:  895 HRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HLTF_RABIT (Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.829e-14
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQ--EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385
            + F   DG+     RV+ +  FQ  E     I LL+ + GG+GL L  A RV ++DPAWNP+ ++Q  DR +R+GQK++V++ + +   +VEE + + Q  K  L   A   K+      Q  + E+ +L
Sbjct:  873 FVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQRFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELAAGAFGTKKNANEMKQAKINEIRTL 1002          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD5_CRYNE (DNA repair protein RAD5 OS=Cryptococcus neoformans GN=RAD5 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 41/131 (31.30%), Postives = 74/131 (56.49%), Query Frame = 2
Query:    5 KFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTS-QVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQ 394
            ++L FDGT   + R   + +F      P+ LL S + GG+GL LT A+ V ++D  WN + + Q++DR +R+GQ K V V R +  GTVE++I + Q  K  L   +  +  + +  +  D++++  + ++
Sbjct: 1061 RWLRFDGTMSQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNLTMANYVFLMDTWWNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKTALVNASLSNGAKTKETTLADIKKIFGMDEE 1191          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289
            Y +   DG T   +R   +  + + G    +FLL+++ GGLG+ L  AD VI+ D  WNP  D Q+ DRA+RIGQKK+V V+R  T   +EEK+  +
Sbjct:  531 YLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIER 627          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HLTF_MOUSE (Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 43/134 (32.09%), Postives = 72/134 (53.73%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQ--EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR----KQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385
            + F   DG+     RV+ +  FQ  E     I LL+ + GG+GL L  A RV ++DPAWNP+ ++Q  DR +R+GQK++V++ + +   +VEE + +    K+    G F T       ++     ++R L+ L
Sbjct:  870 FVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNTKRDLAAGAFGTKKTDANDMKQAKINEIRTLIDL 1003          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280
            Y++   DG+ K   R K ++ F +      +FLL+++ GGLG+ L  AD VI+ D  WNP  D Q+  RA+R+GQKK V++YR +T  +VEE+I
Sbjct:  627 YQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERI 720          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD1_YEAST (Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae GN=CHD1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289
            F   DGT  ++ R   ++ F   D    +FLL+++ GGLG+ L  AD V++ D  WNP  D Q++ RA+RIGQK  V+VYRL++  TVEE++  +
Sbjct:  738 FQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLER 832          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD1_DROME (Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 54/162 (33.33%), Postives = 81/162 (50.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY----RKQIF------------KGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEE 436
            + F   DG+ K   R + ++ F  EG     FLL+++ GGLG+ L  AD VI+ D  WNP  D Q+  RA+RIGQK  V +YRL+T  +VEE+I     +K +             +  L K+   H      F++ DL  +L   K G +     +Q H++
Sbjct:  877 FPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRMDTTGRTVLDKSGNGHSSNSNPFNKDDLSAIL---KFGAEELFKDEQEHDD 1035          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD1L_DANRE (Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio GN=chd1l PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 328
            Y +   DG+ +  +R   + +F   DV  IFLL+++ GG+G+ LT AD VI VD  +NP  D Q+  RA+RIGQ + V V RL+   T+EE IY + + K  L  T  E
Sbjct:  377 YSYERLDGSVRGEERNLAIKNFSTKDVF-IFLLSTKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIE 484          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD3_CAEEL (Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.119e-14
Identity = 39/94 (41.49%), Postives = 58/94 (61.70%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280
            YK+   DG+     R   ++ +   G    +FLL+++ GGLG+ L  AD VI+ D  WNP  D Q+  RA+R+GQK  V++YR +T G+VEE+I
Sbjct:  981 YKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERI 1074          
The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
SMRCD_HUMAN1.072e-1438.95SWI/SNF-related matrix-associated actin-dependent ... [more]
HLTF_RABIT1.829e-1433.85Helicase-like transcription factor OS=Oryctolagus ... [more]
RAD5_CRYNE2.388e-1431.30DNA repair protein RAD5 OS=Cryptococcus neoformans... [more]
ISW2_ARATH2.388e-1441.24Putative chromatin-remodeling complex ATPase chain... [more]
HLTF_MOUSE2.388e-1432.09Helicase-like transcription factor OS=Mus musculus... [more]
CHD3_DROME2.388e-1442.55Chromodomain-helicase-DNA-binding protein 3 OS=Dro... [more]
CHD1_YEAST2.388e-1442.11Chromo domain-containing protein 1 OS=Saccharomyce... [more]
CHD1_DROME2.388e-1433.33Chromodomain-helicase-DNA-binding protein 1 OS=Dro... [more]
CHD1L_DANRE2.388e-1441.28Chromodomain-helicase-DNA-binding protein 1-like O... [more]
CHD3_CAEEL3.119e-1441.49Chromodomain-helicase-DNA-binding protein 3 homolo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bp
TTACAAGTTTCTCCTTTTTGATGGTACCACAAAAGCTAGTGACAGAGTGA
AGATTGTTAATGATTTTCAAGAGGGTGACGTGGCTCCTATATTTCTTTTG
ACATCTCAAGTTGGGGGTCTAGGCCTCACACTTACTAAAGCAGACCGTGT
GATTGTGGTGGATCCTGCTTGGAATCCAAGTACTGATAATCAAAGCGTTG
ATCGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTA
ATGACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAA
AGGCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATT
TTAGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTT
GATGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCA
CAACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAG
GTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGA
GTGCAAGTAGTGCAGGAAGAACAGGAAGTGACAAGGAGAAAAGGAACTGC
ATTTGTTGGTAATTTGTCATCTAGCTACCTGGTTGCACGAAACGTCGATG
GGGCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCT
TCTTCCCCAATAACTGAAGCTAAATTGAAAGAGTCTGATATCAAG
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