CF834523

Overview
NameCF834523
Unique NameCF834523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD5_ASHGO (DNA repair protein RAD5 OS=Ashbya gossypii GN=RAD5 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.311e-12
Identity = 39/124 (31.45%), Postives = 68/124 (54.84%), Query Frame = 2
Query:   17 FDGTTKASDRVKIVNDFQEGDVAP--IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS 382
            FDG     +R  ++  F E  +    + LL+ + GG+GL LT A    ++DP W+P  ++Q++DR +RIGQ   V +YR +   ++EEK+ R Q  K  L +     +E+ R    ++++ L +
Sbjct:  962 FDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGVGLNLTCASHAFIMDPWWSPGMEDQAMDRIHRIGQSNTVKIYRFIVENSIEEKMLRIQEKKRSLGEFVDADEEERRRSRIEEIKMLFA 1085          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.311e-12
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280
            YK+   DG    + R + ++ F   G     FLL+++ GGLG+ L  AD VI+ D  WNP  D Q+  RA+RIGQ   V++YR +T  +VEE+I
Sbjct: 1101 YKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERI 1194          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD5_YEAST (DNA repair protein RAD5 OS=Saccharomyces cerevisiae GN=RAD5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 2
Query:    5 KFLLFDGTTKASDRVKIVNDFQEGDVA--PIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQ 292
            K   FDG     +R  ++ DF   D +   I LL+ + GG+GL LT A    ++DP W+PS ++Q++DR +RIGQ   V V R +   ++EEK+ R Q
Sbjct: 1042 KIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQ 1139          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD5_DEBHA (DNA repair protein RAD5 OS=Debaryomyces hansenii GN=RAD5 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12
Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 2
Query:   17 FDGTTKASDRVKIVNDF---QEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQ 292
            FDG    ++R KI+ +F   +  +   I LL+ + GG+GL LT A R  ++DP W+PS ++Q++DR +RIGQ  +V V R +   ++E K+ + Q
Sbjct: 1064 FDGRLNMNERQKILENFSSQKHENKVMILLLSLKAGGVGLNLTTASRAFMMDPWWSPSVEDQAIDRLHRIGQNSNVKVTRFIMADSIETKMLKIQ 1158          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: PKL_ARATH (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 2
Query:   92 FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY----RKQIFKG---GLFKTATEHKEQ----IRYFSQQ 361
            FLL+++ GGLG+ L  AD VI+ D  WNP  D Q++ RA+R+GQ   V++YRL+  GT+EE++     +K + +    G  KT   ++E+    IRY S++
Sbjct:  667 FLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKE 767          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD5_USTMA (DNA repair protein RAD5 OS=Ustilago maydis GN=RAD5 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 40/110 (36.36%), Postives = 64/110 (58.18%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP---IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA 322
            + FL  DG+T    R K+V +FQ         +FL++ + GG+GL LT A+++ ++D  WN S +NQ++DR +R GQ   V V+R +   ++E++I   Q  K  L K A
Sbjct: 1252 FHFLRLDGSTPQKVRDKLVLEFQSPSPTNHVVLFLISLKAGGVGLNLTAANKIWLLDFWWNSSIENQAIDRIHRFGQTSPVSVFRYIIKDSIEDRILLIQKRKDMLIKHA 1361          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD5_SCHPO (DNA repair protein rad5 OS=Schizosaccharomyces pombe GN=rad8 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 41/122 (33.61%), Postives = 71/122 (58.20%), Query Frame = 2
Query:   17 FDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKT--ATEHKEQIRYFSQQDLREL 376
            FDGT     R   +  F+      + +++ + GG+GL LT A+ V ++DP W+ S + Q++DR +R+GQ+K V V R +   TVEE++ + Q  K  +  T   +E K+Q++  S +D++ L
Sbjct: 1011 FDGTMSQQMRSTALETFRNDPDVNVLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTVEERMLKIQERKNFITGTLGMSEGKQQVQ--SIEDIKML 1130          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: YFK8_YEAST (Uncharacterized ATP-dependent helicase YFR038W OS=Saccharomyces cerevisiae GN=YFR038W PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.892e-11
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 2
Query:   20 DGTTKASDRVKIVNDFQEG-DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGL 310
            DG+     R   +  F    D   IFLL+++  GLG+ L  AD V++ D  WNP  D Q++DR +RIGQ+  V+VYRL    T+E  I  +   K  L
Sbjct:  650 DGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVILTRAANKRNL 747          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMAL1_XENTR (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus tropicalis GN=smarcal1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11
Identity = 51/163 (31.29%), Postives = 81/163 (49.69%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGT--------VEEKIYRKQIFKGGLFK-TATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESL 469
            ++  DG T ++DR  + + FQ  + + + +L+     +GLTL+ AD V+  +  WNP    Q+ DR +RIGQ   V ++ L+  GT        ++EKI  K + + GL +   +E  E   YF +         PKQ     L Q+   EE G + N DE+L
Sbjct:  755 YIRIDGNTSSADRQSLCHKFQMSEKSCVAVLSITAANMGLTLSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMIQEKI--KVLGQAGLSEANFSETTESTDYFYKD--------PKQKTIYDLFQRSFSEE-GAETNADEAL 906          
The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RAD5_ASHGO1.311e-1231.45DNA repair protein RAD5 OS=Ashbya gossypii GN=RAD5... [more]
CHD3_HUMAN1.311e-1241.49Chromodomain-helicase-DNA-binding protein 3 OS=Hom... [more]
RAD5_YEAST1.712e-1238.78DNA repair protein RAD5 OS=Saccharomyces cerevisia... [more]
RAD5_DEBHA2.236e-1237.89DNA repair protein RAD5 OS=Debaryomyces hansenii G... [more]
PKL_ARATH2.920e-1239.60CHD3-type chromatin-remodeling factor PICKLE OS=Ar... [more]
RAD5_USTMA8.495e-1236.36DNA repair protein RAD5 OS=Ustilago maydis GN=RAD5... [more]
RAD5_SCHPO8.495e-1233.61DNA repair protein rad5 OS=Schizosaccharomyces pom... [more]
YFK8_YEAST1.892e-1138.78Uncharacterized ATP-dependent helicase YFR038W OS=... [more]
SMAL1_XENTR2.472e-1131.29SWI/SNF-related matrix-associated actin-dependent ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bp
TTACAAGTTTCTCCTTTTTGATGGTACCACAAAAGCTAGTGACAGAGTGA
AGATTGTTAATGATTTTCAAGAGGGTGACGTGGCTCCTATATTTCTTTTG
ACATCTCAAGTTGGGGGTCTAGGCCTCACACTTACTAAAGCAGACCGTGT
GATTGTGGTGGATCCTGCTTGGAATCCAAGTACTGATAATCAAAGCGTTG
ATCGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTA
ATGACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAA
AGGCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATT
TTAGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTT
GATGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCA
CAACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAG
GTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGA
GTGCAAGTAGTGCAGGAAGAACAGGAAGTGACAAGGAGAAAAGGAACTGC
ATTTGTTGGTAATTTGTCATCTAGCTACCTGGTTGCACGAAACGTCGATG
GGGCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCT
TCTTCCCCAATAACTGAAGCTAAATTGAAAGAGTCTGATATCAAG
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