CF834523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD5_ASHGO (DNA repair protein RAD5 OS=Ashbya gossypii GN=RAD5 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.311e-12 Identity = 39/124 (31.45%), Postives = 68/124 (54.84%), Query Frame = 2 Query: 17 FDGTTKASDRVKIVNDFQEGDVAP--IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS 382 FDG +R ++ F E + + LL+ + GG+GL LT A ++DP W+P ++Q++DR +RIGQ V +YR + ++EEK+ R Q K L + +E+ R ++++ L + Sbjct: 962 FDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGVGLNLTCASHAFIMDPWWSPGMEDQAMDRIHRIGQSNTVKIYRFIVENSIEEKMLRIQEKKRSLGEFVDADEEERRRSRIEEIKMLFA 1085
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.311e-12 Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280 YK+ DG + R + ++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ V++YR +T +VEE+I Sbjct: 1101 YKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERI 1194
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD5_YEAST (DNA repair protein RAD5 OS=Saccharomyces cerevisiae GN=RAD5 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12 Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 2 Query: 5 KFLLFDGTTKASDRVKIVNDFQEGDVA--PIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQ 292 K FDG +R ++ DF D + I LL+ + GG+GL LT A ++DP W+PS ++Q++DR +RIGQ V V R + ++EEK+ R Q Sbjct: 1042 KIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQ 1139
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD5_DEBHA (DNA repair protein RAD5 OS=Debaryomyces hansenii GN=RAD5 PE=3 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12 Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 2 Query: 17 FDGTTKASDRVKIVNDF---QEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQ 292 FDG ++R KI+ +F + + I LL+ + GG+GL LT A R ++DP W+PS ++Q++DR +RIGQ +V V R + ++E K+ + Q Sbjct: 1064 FDGRLNMNERQKILENFSSQKHENKVMILLLSLKAGGVGLNLTTASRAFMMDPWWSPSVEDQAIDRLHRIGQNSNVKVTRFIMADSIETKMLKIQ 1158
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: PKL_ARATH (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12 Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 2 Query: 92 FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY----RKQIFKG---GLFKTATEHKEQ----IRYFSQQ 361 FLL+++ GGLG+ L AD VI+ D WNP D Q++ RA+R+GQ V++YRL+ GT+EE++ +K + + G KT ++E+ IRY S++ Sbjct: 667 FLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKE 767
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD5_USTMA (DNA repair protein RAD5 OS=Ustilago maydis GN=RAD5 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12 Identity = 40/110 (36.36%), Postives = 64/110 (58.18%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP---IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA 322 + FL DG+T R K+V +FQ +FL++ + GG+GL LT A+++ ++D WN S +NQ++DR +R GQ V V+R + ++E++I Q K L K A Sbjct: 1252 FHFLRLDGSTPQKVRDKLVLEFQSPSPTNHVVLFLISLKAGGVGLNLTAANKIWLLDFWWNSSIENQAIDRIHRFGQTSPVSVFRYIIKDSIEDRILLIQKRKDMLIKHA 1361
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD5_SCHPO (DNA repair protein rad5 OS=Schizosaccharomyces pombe GN=rad8 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12 Identity = 41/122 (33.61%), Postives = 71/122 (58.20%), Query Frame = 2 Query: 17 FDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKT--ATEHKEQIRYFSQQDLREL 376 FDGT R + F+ + +++ + GG+GL LT A+ V ++DP W+ S + Q++DR +R+GQ+K V V R + TVEE++ + Q K + T +E K+Q++ S +D++ L Sbjct: 1011 FDGTMSQQMRSTALETFRNDPDVNVLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTVEERMLKIQERKNFITGTLGMSEGKQQVQ--SIEDIKML 1130
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: YFK8_YEAST (Uncharacterized ATP-dependent helicase YFR038W OS=Saccharomyces cerevisiae GN=YFR038W PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.892e-11 Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 2 Query: 20 DGTTKASDRVKIVNDFQEG-DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGL 310 DG+ R + F D IFLL+++ GLG+ L AD V++ D WNP D Q++DR +RIGQ+ V+VYRL T+E I + K L Sbjct: 650 DGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVILTRAANKRNL 747
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMAL1_XENTR (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus tropicalis GN=smarcal1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11 Identity = 51/163 (31.29%), Postives = 81/163 (49.69%), Query Frame = 2 Query: 8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGT--------VEEKIYRKQIFKGGLFK-TATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESL 469 ++ DG T ++DR + + FQ + + + +L+ +GLTL+ AD V+ + WNP Q+ DR +RIGQ V ++ L+ GT ++EKI K + + GL + +E E YF + PKQ L Q+ EE G + N DE+L Sbjct: 755 YIRIDGNTSSADRQSLCHKFQMSEKSCVAVLSITAANMGLTLSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMIQEKI--KVLGQAGLSEANFSETTESTDYFYKD--------PKQKTIYDLFQRSFSEE-GAETNADEAL 906 The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 169
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bpback to top |