CF834523

Overview
NameCF834523
Unique NameCF834523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_ASPNC (Putative DNA helicase ino80 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ino80 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            YK+   DG+TK  DR   V DFQ+     +FLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+T GT+EE+I ++ + K
Sbjct: 1447 YKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQK 1546          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_ASPFU (Putative DNA helicase ino80 OS=Aspergillus fumigatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            YK+   DG+TK  DR   V DFQ+     +FLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+T GT+EE+I ++ + K
Sbjct: 1459 YKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQK 1558          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD54_MOUSE (DNA repair and recombination protein RAD54-like OS=Mus musculus GN=Rad54l PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.545e-21
Identity = 54/145 (37.24%), Postives = 87/145 (60.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI-RYFSQQDLRELLSLPKQGFDVSLTQQQLH 430
            Y ++  DGT     R K+V  F        +F+L+S+ GG GL L  A+R+++ DP WNP+ D Q++ R +R GQKK   +YRL++ GT+EEKI+++Q  K  L     + ++ + R+FS  +L+EL +L +    +S T  +LH
Sbjct:  538 YLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFTLDEA--SLSDTHDRLH 680          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: MOT1_YEAST (TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae GN=MOT1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.545e-21
Identity = 63/143 (44.06%), Postives = 81/143 (56.64%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEE 436
            ++  DG+    DR K+V  F E       LLT++VGGLGL LT AD VI V+  WNP  D Q++DRA+RIGQKK V VYR++T GT+EEKI   Q FK  +  T     +Q    +  D  +LL L    FD      Q +EE
Sbjct: 1676 YMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVV--NQQNSGLASMDTHQLLDL----FDPDNVTSQDNEE 1812          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_ASPCL (Putative DNA helicase ino80 OS=Aspergillus clavatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.545e-21
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            YK+   DG+TK  DR   V DFQ+     +FLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+T GT+EE+I ++ + K
Sbjct: 1460 YKYCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQK 1559          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD54_HUMAN (DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.017e-21
Identity = 54/145 (37.24%), Postives = 86/145 (59.31%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI-RYFSQQDLRELLSLPKQGFDVSLTQQQLH 430
            Y ++  DGT     R K+V  F        +F+L+S+ GG GL L  A+R+++ DP WNP+ D Q++ R +R GQKK   +YRL++ GT+EEKI+++Q  K  L     + ++ + R+FS  +L+EL  L +    +S T  +LH
Sbjct:  538 YLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFILDEA--SLSDTHDRLH 680          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD26_HUMAN (Putative DNA repair and recombination protein RAD26-like OS=Homo sapiens GN=RAD26L PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.017e-21
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 2
Query:   20 DGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 352
            DG+TK+ +R+KIV +F       I L+++  GGLGL    A+ V++ DP WNP+ D Q++DRAYRIGQ +DV V RL++ GTVEE +Y +QI+K  L       +   RYF
Sbjct:  566 DGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAKRYF 676          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_MAGGR (Putative DNA helicase INO80 OS=Magnaporthe grisea GN=INO80 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.441e-21
Identity = 48/100 (48.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            +K+   DG+TK  DR   V+DFQ      +FLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+T GT+EE+I ++ + K
Sbjct: 1700 WKYCRLDGSTKFEDRRDTVHDFQTNPSIFVFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRAMQK 1799          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_EMENI (Putative DNA helicase ino80 OS=Emericella nidulans GN=ino80 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.666e-21
Identity = 48/100 (48.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            YK+   DG+TK  DR   V DFQ+     +FLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+T  T+EE+I ++ + K
Sbjct: 1362 YKYCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRSTIEERIRKRALQK 1461          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_SCHPO (Putative DNA helicase ino80 OS=Schizosaccharomyces pombe GN=ino80 PE=1 SV=4)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 48/93 (51.61%), Postives = 67/93 (72.04%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280
            YK+L  DG++K S R  +V ++Q      +FLL+++ GGLG+ LT AD VI  D  WNPS D+Q++DRA+RIGQ+K V VYR +T GT+EE+I
Sbjct: 1470 YKYLRLDGSSKISQRRDMVTEWQTRPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRFITRGTIEERI 1562          
The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
INO80_ASPNC1.183e-2149.00Putative DNA helicase ino80 OS=Aspergillus niger (... [more]
INO80_ASPFU1.183e-2149.00Putative DNA helicase ino80 OS=Aspergillus fumigat... [more]
RAD54_MOUSE1.545e-2137.24DNA repair and recombination protein RAD54-like OS... [more]
MOT1_YEAST1.545e-2144.06TATA-binding protein-associated factor MOT1 OS=Sac... [more]
INO80_ASPCL1.545e-2149.00Putative DNA helicase ino80 OS=Aspergillus clavatu... [more]
RAD54_HUMAN2.017e-2137.24DNA repair and recombination protein RAD54-like OS... [more]
RAD26_HUMAN2.017e-2145.95Putative DNA repair and recombination protein RAD2... [more]
INO80_MAGGR3.441e-2148.00Putative DNA helicase INO80 OS=Magnaporthe grisea ... [more]
INO80_EMENI7.666e-2148.00Putative DNA helicase ino80 OS=Emericella nidulans... [more]
INO80_SCHPO1.001e-2051.61Putative DNA helicase ino80 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bp
TTACAAGTTTCTCCTTTTTGATGGTACCACAAAAGCTAGTGACAGAGTGA
AGATTGTTAATGATTTTCAAGAGGGTGACGTGGCTCCTATATTTCTTTTG
ACATCTCAAGTTGGGGGTCTAGGCCTCACACTTACTAAAGCAGACCGTGT
GATTGTGGTGGATCCTGCTTGGAATCCAAGTACTGATAATCAAAGCGTTG
ATCGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTA
ATGACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAA
AGGCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATT
TTAGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTT
GATGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCA
CAACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAG
GTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGA
GTGCAAGTAGTGCAGGAAGAACAGGAAGTGACAAGGAGAAAAGGAACTGC
ATTTGTTGGTAATTTGTCATCTAGCTACCTGGTTGCACGAAACGTCGATG
GGGCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCT
TCTTCCCCAATAACTGAAGCTAAATTGAAAGAGTCTGATATCAAG
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