CF834523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: BTAF1_HUMAN (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.708e-20 Identity = 56/131 (42.75%), Postives = 76/131 (58.02%), Query Frame = 2 Query: 8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLPKQG 397 +L DG+ R IV+ F + LLT+ VGGLGL LT AD V+ V+ WNP D Q++DRA+RIGQK+ V VYRL+T GT+EEKI Q FK + T ++ ++ L +L +L K G Sbjct: 1674 YLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDG 1804
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20 Identity = 50/123 (40.65%), Postives = 77/123 (62.60%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI---------YRKQIFKGGLFKTATEHKEQI 343 + ++ DG++K S+R +V DFQ + +FLL+++ GGLG+ LT AD VI D WNP+ D Q++DRA+R+GQ K V VYRL+ GT+EE+I ++ + GG FK T +++ Sbjct: 1142 HTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEV 1264
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20 Identity = 50/123 (40.65%), Postives = 77/123 (62.60%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI---------YRKQIFKGGLFKTATEHKEQI 343 + ++ DG++K S+R +V DFQ + +FLL+++ GGLG+ LT AD VI D WNP+ D Q++DRA+R+GQ K V VYRL+ GT+EE+I ++ + GG FK T +++ Sbjct: 1145 HTYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEV 1267
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RA54B_CHICK (DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20 Identity = 58/132 (43.94%), Postives = 81/132 (61.36%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEG-DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK---GGLFKTATEHKEQIRYFSQQDLRELLSL 385 Y + DG T S R +IV+ F A IFLL+S+ GG+GL L A +I+ D WNP+TD Q++ R +R GQK V +YRL+T GT+EEKIY++QI K G ++ E I +FS ++LR L +L Sbjct: 692 YSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHI-HFSVEELRNLFTL 822
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_DEBHA (Putative DNA helicase INO80 OS=Debaryomyces hansenii GN=INO80 PE=3 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20 Identity = 48/114 (42.11%), Postives = 75/114 (65.79%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI 343 +K++ DG++K DR +V+D+Q +FLL+++ GGLG+ LT AD VI D WNP+ D+Q++DRA+R+GQ + V VYRL+T GT+EE++ + K + + E K I Sbjct: 1183 HKYIRLDGSSKLDDRRDLVHDWQTKPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLTRGTIEERMRDRAKQKEQVQQVVMEGKSAI 1296
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_ASHGO (Putative DNA helicase INO80 OS=Ashbya gossypii GN=INO80 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.489e-20 Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280 YK + DG++K DR +V+D+Q IFLL+++ GGLG+ LT AD VI D WNP+ D+Q++DRA+R+GQ K V VYRL+ GT+EE++ Sbjct: 1281 YKHIRLDGSSKLEDRRDLVHDWQTKSDIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLLIKGTIEERM 1373
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 8.475e-20 Identity = 50/123 (40.65%), Postives = 76/123 (61.79%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI---------YRKQIFKGGLFKTATEHKEQI 343 ++++ DG++K S R +V DFQ +FLL+++ GGLG+ LT AD VI D WNP+ D Q++DRA+R+GQ K V VYRL+ GT+EE+I ++ + GG FK T +++ Sbjct: 1197 HRYMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLKPKEV 1319
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19 Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289 YK+L DG++ DR +V DFQ +FLL+++ GGLG+ LT AD VI + WNP+ D Q++DRA+R+GQ KDV VYRL+ TVEEKI + Sbjct: 1247 YKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHR 1342
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RA54B_HUMAN (DNA repair and recombination protein RAD54B OS=Homo sapiens GN=RAD54B PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19 Identity = 60/154 (38.96%), Postives = 88/154 (57.14%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA---TEHKEQIRYFSQQDLRELLSLPKQG-------FDVSLTQQQLH 430 Y + DG T S R +IV+ F + IFLL+S+ GG+GL L +I+ D WNP+TD Q++ R +R GQK V +YRL+T GT+EEKIY++QI K GL T+ E I+ FS ++L+ L +L + D T +++H Sbjct: 685 YAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQ-FSVEELKNLFTLHESSDCVTHDLLDCECTGEEVH 837
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_CANGA (Putative DNA helicase INO80 OS=Candida glabrata GN=INO80 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19 Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280 Y + DG++K DR +V+D+Q IFLL+++ GGLG+ LT AD VI D WNP+ D+Q++DRA+R+GQ K V VYRL+ GT+EE++ Sbjct: 1336 YNHIRLDGSSKLEDRRDLVHDWQTNPEIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLLVRGTIEERM 1428 The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 169
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bpback to top |