CF834523

Overview
NameCF834523
Unique NameCF834523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: BTAF1_HUMAN (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.708e-20
Identity = 56/131 (42.75%), Postives = 76/131 (58.02%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLPKQG 397
            +L  DG+     R  IV+ F       + LLT+ VGGLGL LT AD V+ V+  WNP  D Q++DRA+RIGQK+ V VYRL+T GT+EEKI   Q FK  +  T  ++    ++      L +L +L K G
Sbjct: 1674 YLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDG 1804          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 50/123 (40.65%), Postives = 77/123 (62.60%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI---------YRKQIFKGGLFKTATEHKEQI 343
            + ++  DG++K S+R  +V DFQ  +   +FLL+++ GGLG+ LT AD VI  D  WNP+ D Q++DRA+R+GQ K V VYRL+  GT+EE+I          ++ +  GG FK  T   +++
Sbjct: 1142 HTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEV 1264          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 50/123 (40.65%), Postives = 77/123 (62.60%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI---------YRKQIFKGGLFKTATEHKEQI 343
            + ++  DG++K S+R  +V DFQ  +   +FLL+++ GGLG+ LT AD VI  D  WNP+ D Q++DRA+R+GQ K V VYRL+  GT+EE+I          ++ +  GG FK  T   +++
Sbjct: 1145 HTYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEV 1267          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RA54B_CHICK (DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 58/132 (43.94%), Postives = 81/132 (61.36%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEG-DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK---GGLFKTATEHKEQIRYFSQQDLRELLSL 385
            Y +   DG T  S R +IV+ F      A IFLL+S+ GG+GL L  A  +I+ D  WNP+TD Q++ R +R GQK  V +YRL+T GT+EEKIY++QI K    G     ++  E I +FS ++LR L +L
Sbjct:  692 YSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHI-HFSVEELRNLFTL 822          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_DEBHA (Putative DNA helicase INO80 OS=Debaryomyces hansenii GN=INO80 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 48/114 (42.11%), Postives = 75/114 (65.79%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI 343
            +K++  DG++K  DR  +V+D+Q      +FLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+T GT+EE++  +   K  + +   E K  I
Sbjct: 1183 HKYIRLDGSSKLDDRRDLVHDWQTKPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLTRGTIEERMRDRAKQKEQVQQVVMEGKSAI 1296          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_ASHGO (Putative DNA helicase INO80 OS=Ashbya gossypii GN=INO80 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.489e-20
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280
            YK +  DG++K  DR  +V+D+Q      IFLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ K V VYRL+  GT+EE++
Sbjct: 1281 YKHIRLDGSSKLEDRRDLVHDWQTKSDIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLLIKGTIEERM 1373          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.475e-20
Identity = 50/123 (40.65%), Postives = 76/123 (61.79%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI---------YRKQIFKGGLFKTATEHKEQI 343
            ++++  DG++K S R  +V DFQ      +FLL+++ GGLG+ LT AD VI  D  WNP+ D Q++DRA+R+GQ K V VYRL+  GT+EE+I          ++ +  GG FK  T   +++
Sbjct: 1197 HRYMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLKPKEV 1319          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289
            YK+L  DG++   DR  +V DFQ      +FLL+++ GGLG+ LT AD VI  +  WNP+ D Q++DRA+R+GQ KDV VYRL+   TVEEKI  +
Sbjct: 1247 YKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHR 1342          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RA54B_HUMAN (DNA repair and recombination protein RAD54B OS=Homo sapiens GN=RAD54B PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19
Identity = 60/154 (38.96%), Postives = 88/154 (57.14%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA---TEHKEQIRYFSQQDLRELLSLPKQG-------FDVSLTQQQLH 430
            Y +   DG T  S R +IV+ F     +  IFLL+S+ GG+GL L     +I+ D  WNP+TD Q++ R +R GQK  V +YRL+T GT+EEKIY++QI K GL       T+  E I+ FS ++L+ L +L +          D   T +++H
Sbjct:  685 YAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQ-FSVEELKNLFTLHESSDCVTHDLLDCECTGEEVH 837          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_CANGA (Putative DNA helicase INO80 OS=Candida glabrata GN=INO80 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280
            Y  +  DG++K  DR  +V+D+Q      IFLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ K V VYRL+  GT+EE++
Sbjct: 1336 YNHIRLDGSSKLEDRRDLVHDWQTNPEIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLLVRGTIEERM 1428          
The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
BTAF1_HUMAN1.708e-2042.75TATA-binding protein-associated factor 172 OS=Homo... [more]
INO80_HUMAN2.230e-2040.65Putative DNA helicase INO80 complex homolog 1 OS=H... [more]
INO80_MOUSE2.913e-2040.65Putative DNA helicase INO80 complex homolog 1 OS=M... [more]
RA54B_CHICK3.804e-2043.94DNA repair and recombination protein RAD54B OS=Gal... [more]
INO80_DEBHA4.969e-2042.11Putative DNA helicase INO80 OS=Debaryomyces hansen... [more]
INO80_ASHGO6.489e-2049.46Putative DNA helicase INO80 OS=Ashbya gossypii GN=... [more]
INO80_DROME8.475e-2040.65Putative DNA helicase Ino80 OS=Drosophila melanoga... [more]
INO80_ARATH1.107e-1950.00DNA helicase INO80 complex homolog 1 OS=Arabidopsi... [more]
RA54B_HUMAN1.446e-1938.96DNA repair and recombination protein RAD54B OS=Hom... [more]
INO80_CANGA1.446e-1948.39Putative DNA helicase INO80 OS=Candida glabrata GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bp
TTACAAGTTTCTCCTTTTTGATGGTACCACAAAAGCTAGTGACAGAGTGA
AGATTGTTAATGATTTTCAAGAGGGTGACGTGGCTCCTATATTTCTTTTG
ACATCTCAAGTTGGGGGTCTAGGCCTCACACTTACTAAAGCAGACCGTGT
GATTGTGGTGGATCCTGCTTGGAATCCAAGTACTGATAATCAAAGCGTTG
ATCGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTA
ATGACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAA
AGGCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATT
TTAGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTT
GATGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCA
CAACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAG
GTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGA
GTGCAAGTAGTGCAGGAAGAACAGGAAGTGACAAGGAGAAAAGGAACTGC
ATTTGTTGGTAATTTGTCATCTAGCTACCTGGTTGCACGAAACGTCGATG
GGGCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCT
TCTTCCCCAATAACTGAAGCTAAATTGAAAGAGTCTGATATCAAG
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