CF834523

Overview
NameCF834523
Unique NameCF834523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ATRX_DROME (Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQE--GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS 382
            +   DG+     R  +   F       A +FL++++ GGLG+ L  A+RV++ D +WNPS D QS+ R YR GQ K   +YRL+  GT+E+K+Y +Q+ K    K   + ++  R+++Q DL EL S
Sbjct:  963 YFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQISRHYNQTDLMELYS 1089          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.888e-19
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289
            Y++   DG+T   DR++ ++D+   D    +FLLT++ GGLG+ LT AD V++ D  WNP  D Q++DRA+RIGQKK V V+RL+T  +VEEKI  +
Sbjct:  543 YEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILER 639          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ARIP4_XENTR (Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.888e-19
Identity = 58/178 (32.58%), Postives = 99/178 (55.62%), Query Frame = 2
Query:   20 DGTTKASDRVKIVNDFQE--GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESL--EAHIQFLDTLGIAGVSHHSLLFSK 541
            DG+T AS+R +++N F +   +   +FLL+++ G LG+ L  A+RV+V D +WNP  D Q+V R YR GQ+K   +YRL++  T+E+KIY +QI K G+     +       F+++++  LL   ++  D S        +H D  +  E++  +A +Q+   +      H SLL  +
Sbjct:  781 DGSTSASERERLINQFNDPSNEKVWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQRKPCYIYRLVSDFTLEKKIYDRQITKQGMSDRVVDDLNPEVNFTRREVENLLHFVEEEPDAS-------RQHLDSSSFHEAVLQKACLQYPHLITKEPFQHESLLLDR 951          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_YEAST (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae GN=INO80 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.466e-19
Identity = 47/113 (41.59%), Postives = 72/113 (63.72%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ 340
            Y  +  DG++K  DR  +V+D+Q      +FLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+  GT+EE++  +   K  + +   E K Q
Sbjct: 1340 YNHIRLDGSSKLEDRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQ 1452          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_YEAS7 (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain YJM789) GN=INO80 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.466e-19
Identity = 47/113 (41.59%), Postives = 72/113 (63.72%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ 340
            Y  +  DG++K  DR  +V+D+Q      +FLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+  GT+EE++  +   K  + +   E K Q
Sbjct: 1346 YNHIRLDGSSKLEDRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQ 1458          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ATRX_MOUSE (Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.466e-19
Identity = 61/176 (34.66%), Postives = 92/176 (52.27%), Query Frame = 2
Query:   20 DGTTKASDRVKIVNDFQ-EGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS---------------------LPKQGFDVSLTQQQLHEEHGDQHNMDESLEAH 478
            DG+T A  R K   +F  E +V   +F+++++ G LG+ L  A+RVI+ D +WNPS D QS+ R YR GQ K V VYR +  GT+E+KIY +Q+ K  L     + ++  R+F+  +L EL +                     LPK      L   Q+H+EH   ++  +SL  H
Sbjct: 2070 DGSTNAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKKRDTPMLPKDTILAELL--QIHKEHIVGYHEHDSLLDH 2243          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ATRX_PONPY (Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19
Identity = 61/176 (34.66%), Postives = 92/176 (52.27%), Query Frame = 2
Query:   20 DGTTKASDRVKIVNDFQ-EGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS---------------------LPKQGFDVSLTQQQLHEEHGDQHNMDESLEAH 478
            DG+T A  R K   +F  E +V   +F+++++ G LG+ L  A+RVI+ D +WNPS D QS+ R YR GQ K V VYR +  GT+E+KIY +Q+ K  L     + ++  R+F+  +L EL +                     LPK      L   Q+H+EH   ++  +SL  H
Sbjct: 2087 DGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKKRDTPMLPKDTILAELL--QIHKEHIVGYHEHDSLLDH 2260          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ATRX_PANTR (Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19
Identity = 61/176 (34.66%), Postives = 92/176 (52.27%), Query Frame = 2
Query:   20 DGTTKASDRVKIVNDFQ-EGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS---------------------LPKQGFDVSLTQQQLHEEHGDQHNMDESLEAH 478
            DG+T A  R K   +F  E +V   +F+++++ G LG+ L  A+RVI+ D +WNPS D QS+ R YR GQ K V VYR +  GT+E+KIY +Q+ K  L     + ++  R+F+  +L EL +                     LPK      L   Q+H+EH   ++  +SL  H
Sbjct: 2087 DGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKKRDTPMLPKDTILAELL--QIHKEHIVGYHEHDSLLDH 2260          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ATRX_HUMAN (Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=4)

HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19
Identity = 61/176 (34.66%), Postives = 92/176 (52.27%), Query Frame = 2
Query:   20 DGTTKASDRVKIVNDFQ-EGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS---------------------LPKQGFDVSLTQQQLHEEHGDQHNMDESLEAH 478
            DG+T A  R K   +F  E +V   +F+++++ G LG+ L  A+RVI+ D +WNPS D QS+ R YR GQ K V VYR +  GT+E+KIY +Q+ K  L     + ++  R+F+  +L EL +                     LPK      L   Q+H+EH   ++  +SL  H
Sbjct: 2087 DGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKKRDTPMLPKDTILAELL--QIHKEHIVGYHEHDSLLDH 2260          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_LODEL (Putative DNA helicase ino80 OS=Lodderomyces elongisporus GN=INO80 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.206e-19
Identity = 42/93 (45.16%), Postives = 67/93 (72.04%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280
            +K++  DG++K  DR  +V+D+Q      +FLL+++ GGLG+ LT AD V+  D  WNP+ D+Q++DRA+R+GQ + V VYRL+T  T+EE++
Sbjct: 1352 HKYIRLDGSSKLDDRRDLVHDWQTKPEIFVFLLSTRAGGLGINLTAADTVVFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLTRNTIEERM 1444          
The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ATRX_DROME1.446e-1937.01Transcriptional regulator ATRX homolog OS=Drosophi... [more]
ISW1_YEAST1.888e-1947.42ISWI chromatin-remodeling complex ATPase ISW1 OS=S... [more]
ARIP4_XENTR1.888e-1932.58Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE... [more]
INO80_YEAST2.466e-1941.59Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]
INO80_YEAS72.466e-1941.59Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]
ATRX_MOUSE2.466e-1934.66Transcriptional regulator ATRX OS=Mus musculus GN=... [more]
ATRX_PONPY3.221e-1934.66Transcriptional regulator ATRX OS=Pongo pygmaeus G... [more]
ATRX_PANTR3.221e-1934.66Transcriptional regulator ATRX OS=Pan troglodytes ... [more]
ATRX_HUMAN3.221e-1934.66Transcriptional regulator ATRX OS=Homo sapiens GN=... [more]
INO80_LODEL4.206e-1945.16Putative DNA helicase ino80 OS=Lodderomyces elongi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bp
TTACAAGTTTCTCCTTTTTGATGGTACCACAAAAGCTAGTGACAGAGTGA
AGATTGTTAATGATTTTCAAGAGGGTGACGTGGCTCCTATATTTCTTTTG
ACATCTCAAGTTGGGGGTCTAGGCCTCACACTTACTAAAGCAGACCGTGT
GATTGTGGTGGATCCTGCTTGGAATCCAAGTACTGATAATCAAAGCGTTG
ATCGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTA
ATGACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAA
AGGCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATT
TTAGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTT
GATGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCA
CAACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAG
GTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGA
GTGCAAGTAGTGCAGGAAGAACAGGAAGTGACAAGGAGAAAAGGAACTGC
ATTTGTTGGTAATTTGTCATCTAGCTACCTGGTTGCACGAAACGTCGATG
GGGCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCT
TCTTCCCCAATAACTGAAGCTAAATTGAAAGAGTCTGATATCAAG
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