CF834523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ATRX_DROME (Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19 Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 2 Query: 8 FLLFDGTTKASDRVKIVNDFQE--GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS 382 + DG+ R + F A +FL++++ GGLG+ L A+RV++ D +WNPS D QS+ R YR GQ K +YRL+ GT+E+K+Y +Q+ K K + ++ R+++Q DL EL S Sbjct: 963 YFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQISRHYNQTDLMELYS 1089
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.888e-19 Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289 Y++ DG+T DR++ ++D+ D +FLLT++ GGLG+ LT AD V++ D WNP D Q++DRA+RIGQKK V V+RL+T +VEEKI + Sbjct: 543 YEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILER 639
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ARIP4_XENTR (Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.888e-19 Identity = 58/178 (32.58%), Postives = 99/178 (55.62%), Query Frame = 2 Query: 20 DGTTKASDRVKIVNDFQE--GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESL--EAHIQFLDTLGIAGVSHHSLLFSK 541 DG+T AS+R +++N F + + +FLL+++ G LG+ L A+RV+V D +WNP D Q+V R YR GQ+K +YRL++ T+E+KIY +QI K G+ + F+++++ LL ++ D S +H D + E++ +A +Q+ + H SLL + Sbjct: 781 DGSTSASERERLINQFNDPSNEKVWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQRKPCYIYRLVSDFTLEKKIYDRQITKQGMSDRVVDDLNPEVNFTRREVENLLHFVEEEPDAS-------RQHLDSSSFHEAVLQKACLQYPHLITKEPFQHESLLLDR 951
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_YEAST (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae GN=INO80 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.466e-19 Identity = 47/113 (41.59%), Postives = 72/113 (63.72%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ 340 Y + DG++K DR +V+D+Q +FLL+++ GGLG+ LT AD VI D WNP+ D+Q++DRA+R+GQ + V VYRL+ GT+EE++ + K + + E K Q Sbjct: 1340 YNHIRLDGSSKLEDRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQ 1452
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_YEAS7 (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain YJM789) GN=INO80 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.466e-19 Identity = 47/113 (41.59%), Postives = 72/113 (63.72%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ 340 Y + DG++K DR +V+D+Q +FLL+++ GGLG+ LT AD VI D WNP+ D+Q++DRA+R+GQ + V VYRL+ GT+EE++ + K + + E K Q Sbjct: 1346 YNHIRLDGSSKLEDRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQ 1458
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ATRX_MOUSE (Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.466e-19 Identity = 61/176 (34.66%), Postives = 92/176 (52.27%), Query Frame = 2 Query: 20 DGTTKASDRVKIVNDFQ-EGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS---------------------LPKQGFDVSLTQQQLHEEHGDQHNMDESLEAH 478 DG+T A R K +F E +V +F+++++ G LG+ L A+RVI+ D +WNPS D QS+ R YR GQ K V VYR + GT+E+KIY +Q+ K L + ++ R+F+ +L EL + LPK L Q+H+EH ++ +SL H Sbjct: 2070 DGSTNAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKKRDTPMLPKDTILAELL--QIHKEHIVGYHEHDSLLDH 2243
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ATRX_PONPY (Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19 Identity = 61/176 (34.66%), Postives = 92/176 (52.27%), Query Frame = 2 Query: 20 DGTTKASDRVKIVNDFQ-EGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS---------------------LPKQGFDVSLTQQQLHEEHGDQHNMDESLEAH 478 DG+T A R K +F E +V +F+++++ G LG+ L A+RVI+ D +WNPS D QS+ R YR GQ K V VYR + GT+E+KIY +Q+ K L + ++ R+F+ +L EL + LPK L Q+H+EH ++ +SL H Sbjct: 2087 DGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKKRDTPMLPKDTILAELL--QIHKEHIVGYHEHDSLLDH 2260
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ATRX_PANTR (Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19 Identity = 61/176 (34.66%), Postives = 92/176 (52.27%), Query Frame = 2 Query: 20 DGTTKASDRVKIVNDFQ-EGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS---------------------LPKQGFDVSLTQQQLHEEHGDQHNMDESLEAH 478 DG+T A R K +F E +V +F+++++ G LG+ L A+RVI+ D +WNPS D QS+ R YR GQ K V VYR + GT+E+KIY +Q+ K L + ++ R+F+ +L EL + LPK L Q+H+EH ++ +SL H Sbjct: 2087 DGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKKRDTPMLPKDTILAELL--QIHKEHIVGYHEHDSLLDH 2260
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ATRX_HUMAN (Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=4) HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19 Identity = 61/176 (34.66%), Postives = 92/176 (52.27%), Query Frame = 2 Query: 20 DGTTKASDRVKIVNDFQ-EGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS---------------------LPKQGFDVSLTQQQLHEEHGDQHNMDESLEAH 478 DG+T A R K +F E +V +F+++++ G LG+ L A+RVI+ D +WNPS D QS+ R YR GQ K V VYR + GT+E+KIY +Q+ K L + ++ R+F+ +L EL + LPK L Q+H+EH ++ +SL H Sbjct: 2087 DGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKKRDTPMLPKDTILAELL--QIHKEHIVGYHEHDSLLDH 2260
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_LODEL (Putative DNA helicase ino80 OS=Lodderomyces elongisporus GN=INO80 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.206e-19 Identity = 42/93 (45.16%), Postives = 67/93 (72.04%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280 +K++ DG++K DR +V+D+Q +FLL+++ GGLG+ LT AD V+ D WNP+ D+Q++DRA+R+GQ + V VYRL+T T+EE++ Sbjct: 1352 HKYIRLDGSSKLDDRRDLVHDWQTKPEIFVFLLSTRAGGLGINLTAADTVVFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLTRNTIEERM 1444 The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 169
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bpback to top |