CF834523

Overview
NameCF834523
Unique NameCF834523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RA54B_MOUSE (DNA repair and recombination protein RAD54B OS=Mus musculus GN=Rad54b PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA---TEHKEQIRYFSQQDLRELLSL 385
            Y     DG T  S R  IV+ F        IFLL+S+ GG+GL L     +I+ D  WNP+TD Q++ R +R GQK  V +YRL+T GT+EEKIY++QI K GL       T   E I+ FS ++L+ L +L
Sbjct:  663 YACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRSSEHIQ-FSVEELKNLFTL 793          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: MOT1_SCHPO (Probable helicase mot1 OS=Schizosaccharomyces pombe GN=mot1 PE=1 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 58/146 (39.73%), Postives = 79/146 (54.11%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGD 445
            ++  DG+ + + R + V  F       + LLT+ VGGLGL LT AD VI V+  WNP  D Q++DRA+RIGQKK V VYRL+T G +EEKI   Q FK  +  T     +Q    S     ++L L     D   T Q + +E  +
Sbjct: 1766 YMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMGLQRFKMNVASTVV--NQQNAGLSSIGTDQILDLFNTTADEQQTVQNIDKEESE 1909          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA4_RAT (Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            +K+L  DGTTKA DR  ++  F E G    IFLL+++ GGLGL L  AD VI+ D  WNP  D Q+ DRA+RIGQ+ +V V RL T  +VEEKI     +K
Sbjct: 1121 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA4_MOUSE (Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            +K+L  DGTTKA DR  ++  F E G    IFLL+++ GGLGL L  AD VI+ D  WNP  D Q+ DRA+RIGQ+ +V V RL T  +VEEKI     +K
Sbjct: 1121 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA4_HUMAN (Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            +K+L  DGTTKA DR  ++  F E G    IFLL+++ GGLGL L  AD VI+ D  WNP  D Q+ DRA+RIGQ+ +V V RL T  +VEEKI     +K
Sbjct: 1121 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA4_BOVIN (Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            +K+L  DGTTKA DR  ++  F E G    IFLL+++ GGLGL L  AD VI+ D  WNP  D Q+ DRA+RIGQ+ +V V RL T  +VEEKI     +K
Sbjct: 1113 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1213          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_VANPO (Putative DNA helicase INO80 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=INO80 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280
            Y  +  DG++K  DR  +V+D+Q      IFLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+  GT+EE++
Sbjct: 1418 YSHIRLDGSSKLEDRRDLVHDWQTRPDIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLIRGTIEERM 1510          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_CANAL (Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVS 409
            Y+++  DG TK  DR  +   F      P+F+L+++ GGLG+ LT AD VI  D  WNP+ D Q  DR +RIGQ +DV +YR ++  T+E  I +K   K  L     +  E    YF +  +R+L+S    G +++
Sbjct: 1407 YRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGEFTTDYFGKFSVRDLVSDSNIGKEIT 1543          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_KLULA (Putative DNA helicase INO80 OS=Kluyveromyces lactis GN=INO80 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280
            Y  +  DG++K  DR  +V+D+Q      IFLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYRL+  GT+EE++
Sbjct: 1360 YTHIRLDGSSKLDDRRDLVHDWQTKPDIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLIRGTIEERM 1452          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_CANAL (Putative DNA helicase INO80 OS=Candida albicans GN=INO80 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289
            YK++  DG+T    R ++V  +Q      IF+L+++ GGLGL LT AD VI  D  WNP+ D+Q++DRA+RIGQ K V V+RL+T  T+E+KI  +
Sbjct: 1277 YKYIRLDGSTTIESRREMVQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQVKVFRLVTRNTIEQKILER 1372          
The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RA54B_MOUSE5.494e-1943.18DNA repair and recombination protein RAD54B OS=Mus... [more]
MOT1_SCHPO5.494e-1939.73Probable helicase mot1 OS=Schizosaccharomyces pomb... [more]
SMCA4_RAT9.371e-1950.50Transcription activator BRG1 OS=Rattus norvegicus ... [more]
SMCA4_MOUSE9.371e-1950.50Transcription activator BRG1 OS=Mus musculus GN=Sm... [more]
SMCA4_HUMAN9.371e-1950.50Transcription activator BRG1 OS=Homo sapiens GN=SM... [more]
SMCA4_BOVIN9.371e-1950.50Transcription activator BRG1 OS=Bos taurus GN=SMAR... [more]
INO80_VANPO9.371e-1947.31Putative DNA helicase INO80 OS=Vanderwaltozyma pol... [more]
SWR1_CANAL1.224e-1836.50Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=... [more]
INO80_KLULA1.224e-1847.31Putative DNA helicase INO80 OS=Kluyveromyces lacti... [more]
INO80_CANAL1.224e-1846.88Putative DNA helicase INO80 OS=Candida albicans GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bp
TTACAAGTTTCTCCTTTTTGATGGTACCACAAAAGCTAGTGACAGAGTGA
AGATTGTTAATGATTTTCAAGAGGGTGACGTGGCTCCTATATTTCTTTTG
ACATCTCAAGTTGGGGGTCTAGGCCTCACACTTACTAAAGCAGACCGTGT
GATTGTGGTGGATCCTGCTTGGAATCCAAGTACTGATAATCAAAGCGTTG
ATCGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTA
ATGACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAA
AGGCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATT
TTAGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTT
GATGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCA
CAACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAG
GTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGA
GTGCAAGTAGTGCAGGAAGAACAGGAAGTGACAAGGAGAAAAGGAACTGC
ATTTGTTGGTAATTTGTCATCTAGCTACCTGGTTGCACGAAACGTCGATG
GGGCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCT
TCTTCCCCAATAACTGAAGCTAAATTGAAAGAGTCTGATATCAAG
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