CF834523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RA54B_MOUSE (DNA repair and recombination protein RAD54B OS=Mus musculus GN=Rad54b PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19 Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA---TEHKEQIRYFSQQDLRELLSL 385 Y DG T S R IV+ F IFLL+S+ GG+GL L +I+ D WNP+TD Q++ R +R GQK V +YRL+T GT+EEKIY++QI K GL T E I+ FS ++L+ L +L Sbjct: 663 YACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRSSEHIQ-FSVEELKNLFTL 793
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: MOT1_SCHPO (Probable helicase mot1 OS=Schizosaccharomyces pombe GN=mot1 PE=1 SV=4) HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19 Identity = 58/146 (39.73%), Postives = 79/146 (54.11%), Query Frame = 2 Query: 8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGD 445 ++ DG+ + + R + V F + LLT+ VGGLGL LT AD VI V+ WNP D Q++DRA+RIGQKK V VYRL+T G +EEKI Q FK + T +Q S ++L L D T Q + +E + Sbjct: 1766 YMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMGLQRFKMNVASTVV--NQQNAGLSSIGTDQILDLFNTTADEQQTVQNIDKEESE 1909
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA4_RAT (Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19 Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 +K+L DGTTKA DR ++ F E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V RL T +VEEKI +K Sbjct: 1121 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA4_MOUSE (Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19 Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 +K+L DGTTKA DR ++ F E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V RL T +VEEKI +K Sbjct: 1121 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA4_HUMAN (Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19 Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 +K+L DGTTKA DR ++ F E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V RL T +VEEKI +K Sbjct: 1121 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA4_BOVIN (Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19 Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 +K+L DGTTKA DR ++ F E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V RL T +VEEKI +K Sbjct: 1113 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1213
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_VANPO (Putative DNA helicase INO80 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=INO80 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19 Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280 Y + DG++K DR +V+D+Q IFLL+++ GGLG+ LT AD VI D WNP+ D+Q++DRA+R+GQ + V VYRL+ GT+EE++ Sbjct: 1418 YSHIRLDGSSKLEDRRDLVHDWQTRPDIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLIRGTIEERM 1510
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_CANAL (Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18 Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVS 409 Y+++ DG TK DR + F P+F+L+++ GGLG+ LT AD VI D WNP+ D Q DR +RIGQ +DV +YR ++ T+E I +K K L + E YF + +R+L+S G +++ Sbjct: 1407 YRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGEFTTDYFGKFSVRDLVSDSNIGKEIT 1543
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_KLULA (Putative DNA helicase INO80 OS=Kluyveromyces lactis GN=INO80 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18 Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280 Y + DG++K DR +V+D+Q IFLL+++ GGLG+ LT AD VI D WNP+ D+Q++DRA+R+GQ + V VYRL+ GT+EE++ Sbjct: 1360 YTHIRLDGSSKLDDRRDLVHDWQTKPDIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLIRGTIEERM 1452
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_CANAL (Putative DNA helicase INO80 OS=Candida albicans GN=INO80 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18 Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289 YK++ DG+T R ++V +Q IF+L+++ GGLGL LT AD VI D WNP+ D+Q++DRA+RIGQ K V V+RL+T T+E+KI + Sbjct: 1277 YKYIRLDGSTTIESRREMVQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQVKVFRLVTRNTIEQKILER 1372 The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 169
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bpback to top |