CF834523

Overview
NameCF834523
Unique NameCF834523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_SCHPO (Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.598e-18
Identity = 55/152 (36.18%), Postives = 82/152 (53.95%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHN 454
            +++L  DG TK   R  +   F   D  P+F+L+++ GGLG+ LT AD VI  D  WNP  D Q+ DR++RIGQ +DV +YRL++  TVE  + R+   K  L K   +  E    +F + D+ +L  L     D SL + +   + G   N
Sbjct: 1032 HRYLRLDGATKIEQRQILTERFNNDDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQKRMLDKIVIQGGEFTTEWFRKADVLDLFDLD----DESLKKVKADSDSGSTKN 1179          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.598e-18
Identity = 48/128 (37.50%), Postives = 72/128 (56.25%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLS 382
            Y+++  DG TK  DR  +   F      P+F+L+++ GGLG+ LT AD VI  D  WNP+ D Q  DR +RIGQ +DV +YR ++  T+E  I RK   K  L     +  E    YF +  +++L++
Sbjct: 1373 YRYMRLDGATKIEDRQLLTEKFNRDSKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQSRDVHIYRFVSEYTIESNILRKANQKRQLDNVVIQEGEFTTDYFGKFSVKDLVN 1500          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_CRYNE (Putative DNA helicase INO80 OS=Cryptococcus neoformans GN=INO80 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.598e-18
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280
            YK+L  DG++  ++R  +V  +Q      +F L+++ GGLG+ LT AD VI  D  WNPS+D Q++DRA+R+GQ K V VYRL+  GT+EE+I
Sbjct: 1494 YKYLRLDGSSPIAERRDMVTSWQTNPDIFVFCLSTRAGGLGINLTAADTVIFYDHDWNPSSDAQAMDRAHRVGQTKQVTVYRLVARGTIEERI 1586          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.598e-18
Identity = 53/137 (38.69%), Postives = 81/137 (59.12%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR---------KQIFKGGLF---KTATEHKEQIRYFSQQDLRE 373
            + +L  DGTTKA DR +++  F  +G    +FLL+++ GGLGL L  AD V++ D  WNP  D Q+ DRA+RIGQ+ +V V RLMT  +VEE+I           +++ + G+F    T +E ++ ++    QD  E
Sbjct: 1139 FGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNE 1275          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_ASPFU (Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18
Identity = 50/127 (39.37%), Postives = 74/127 (58.27%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 379
            +++L  DGTTK   R  + + F   D   +F+L+S+ GGLG+ LT AD VI  D  WNP+ D Q  DR +RIGQ +DV +YR ++  T+E  I RK   K  L     +  E    YF++ D+R+++
Sbjct: 1419 HRYLRLDGTTKVEQRQILTDRFNNDDRILVFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILRKANQKRMLDDVVIQEGEFTTDYFTKLDVRDMI 1545          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SRCAP_HUMAN (Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.561e-18
Identity = 52/136 (38.24%), Postives = 75/136 (55.15%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK---------QIFKGGLFKTATEHKEQIRYFSQQDLRELLSLP 388
            +L  DG+T+   R  ++  F        F+L+++ GG+G+ LT AD V+  D  WNP+ D Q+ DR +RIGQ +DV +YRL++  TVEE I +K            +GG F TA        YF QQ +REL  +P
Sbjct: 2086 YLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTA--------YFKQQTIRELFDMP 2213          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SNF21_SCHPO (Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe GN=snf21 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            +++L  DG+TKA DR K++  F +      +FLL+++ GGLGL L  AD VI+ D  WNP  D Q+ DRA+RIGQ K+V +YRL+T  +VEE I  +  +K
Sbjct:  777 WRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYK 877          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HEPF1_PLAF7 (Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0048 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.933e-18
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            Y F+  DG+TK   R KIV  F       IF+ +++ G +G+ LT A+ VI  D  WNPS D Q++DR +RIGQ KDV V+R +   TVEE I++KQ+ K
Sbjct: 1809 YSFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVEENIWKKQLQK 1908          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HELLS_HUMAN (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.933e-18
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK 316
            + F   DG+   S+R K ++ F       IFL++++ GGLG+ LT AD VI+ D  WNP +D Q+ DR +RIGQ K VVVYRL+T  T+++KI  +   K  L K
Sbjct:  640 FNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEK 744          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: FUN30_YEAST (Uncharacterized ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae GN=FUN30 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.933e-18
Identity = 45/112 (40.18%), Postives = 72/112 (64.29%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE 337
            YKFL  DG+T+ +DR  +++ F E    PIF+L+++ GG G+ L  A+ VI+ D ++NP  D Q+ DRA+R+GQ K+V +  L+T  ++EEKI++    K  L    +E K+
Sbjct:  991 YKFLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDKK 1102          
The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
SWR1_SCHPO1.598e-1836.18Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1... [more]
SWR1_DEBHA1.598e-1837.50Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=... [more]
INO80_CRYNE1.598e-1847.31Putative DNA helicase INO80 OS=Cryptococcus neofor... [more]
BRM_DROME1.598e-1838.69ATP-dependent helicase brm OS=Drosophila melanogas... [more]
SWR1_ASPFU2.088e-1839.37Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=... [more]
SRCAP_HUMAN3.561e-1838.24Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2[more]
SNF21_SCHPO6.074e-1846.53Chromatin structure-remodeling complex subunit snf... [more]
HEPF1_PLAF77.933e-1846.00Probable ATP-dependent helicase PF08_0048 OS=Plasm... [more]
HELLS_HUMAN7.933e-1843.81Lymphoid-specific helicase OS=Homo sapiens GN=HELL... [more]
FUN30_YEAST7.933e-1840.18Uncharacterized ATP-dependent helicase FUN30 OS=Sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bp
TTACAAGTTTCTCCTTTTTGATGGTACCACAAAAGCTAGTGACAGAGTGA
AGATTGTTAATGATTTTCAAGAGGGTGACGTGGCTCCTATATTTCTTTTG
ACATCTCAAGTTGGGGGTCTAGGCCTCACACTTACTAAAGCAGACCGTGT
GATTGTGGTGGATCCTGCTTGGAATCCAAGTACTGATAATCAAAGCGTTG
ATCGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTA
ATGACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAA
AGGCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATT
TTAGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTT
GATGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCA
CAACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAG
GTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGA
GTGCAAGTAGTGCAGGAAGAACAGGAAGTGACAAGGAGAAAAGGAACTGC
ATTTGTTGGTAATTTGTCATCTAGCTACCTGGTTGCACGAAACGTCGATG
GGGCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCT
TCTTCCCCAATAACTGAAGCTAAATTGAAAGAGTCTGATATCAAG
back to top