CF834523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_SCHPO (Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.598e-18 Identity = 55/152 (36.18%), Postives = 82/152 (53.95%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHN 454 +++L DG TK R + F D P+F+L+++ GGLG+ LT AD VI D WNP D Q+ DR++RIGQ +DV +YRL++ TVE + R+ K L K + E +F + D+ +L L D SL + + + G N Sbjct: 1032 HRYLRLDGATKIEQRQILTERFNNDDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQKRMLDKIVIQGGEFTTEWFRKADVLDLFDLD----DESLKKVKADSDSGSTKN 1179
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.598e-18 Identity = 48/128 (37.50%), Postives = 72/128 (56.25%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLS 382 Y+++ DG TK DR + F P+F+L+++ GGLG+ LT AD VI D WNP+ D Q DR +RIGQ +DV +YR ++ T+E I RK K L + E YF + +++L++ Sbjct: 1373 YRYMRLDGATKIEDRQLLTEKFNRDSKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQSRDVHIYRFVSEYTIESNILRKANQKRQLDNVVIQEGEFTTDYFGKFSVKDLVN 1500
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_CRYNE (Putative DNA helicase INO80 OS=Cryptococcus neoformans GN=INO80 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.598e-18 Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 280 YK+L DG++ ++R +V +Q +F L+++ GGLG+ LT AD VI D WNPS+D Q++DRA+R+GQ K V VYRL+ GT+EE+I Sbjct: 1494 YKYLRLDGSSPIAERRDMVTSWQTNPDIFVFCLSTRAGGLGINLTAADTVIFYDHDWNPSSDAQAMDRAHRVGQTKQVTVYRLVARGTIEERI 1586
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.598e-18 Identity = 53/137 (38.69%), Postives = 81/137 (59.12%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR---------KQIFKGGLF---KTATEHKEQIRYFSQQDLRE 373 + +L DGTTKA DR +++ F +G +FLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+ +V V RLMT +VEE+I +++ + G+F T +E ++ ++ QD E Sbjct: 1139 FGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNE 1275
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_ASPFU (Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18 Identity = 50/127 (39.37%), Postives = 74/127 (58.27%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 379 +++L DGTTK R + + F D +F+L+S+ GGLG+ LT AD VI D WNP+ D Q DR +RIGQ +DV +YR ++ T+E I RK K L + E YF++ D+R+++ Sbjct: 1419 HRYLRLDGTTKVEQRQILTDRFNNDDRILVFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILRKANQKRMLDDVVIQEGEFTTDYFTKLDVRDMI 1545
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SRCAP_HUMAN (Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 3.561e-18 Identity = 52/136 (38.24%), Postives = 75/136 (55.15%), Query Frame = 2 Query: 8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK---------QIFKGGLFKTATEHKEQIRYFSQQDLRELLSLP 388 +L DG+T+ R ++ F F+L+++ GG+G+ LT AD V+ D WNP+ D Q+ DR +RIGQ +DV +YRL++ TVEE I +K +GG F TA YF QQ +REL +P Sbjct: 2086 YLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTA--------YFKQQTIRELFDMP 2213
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SNF21_SCHPO (Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe GN=snf21 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18 Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 +++L DG+TKA DR K++ F + +FLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ K+V +YRL+T +VEE I + +K Sbjct: 777 WRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYK 877
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HEPF1_PLAF7 (Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0048 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.933e-18 Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 Y F+ DG+TK R KIV F IF+ +++ G +G+ LT A+ VI D WNPS D Q++DR +RIGQ KDV V+R + TVEE I++KQ+ K Sbjct: 1809 YSFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVEENIWKKQLQK 1908
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HELLS_HUMAN (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.933e-18 Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK 316 + F DG+ S+R K ++ F IFL++++ GGLG+ LT AD VI+ D WNP +D Q+ DR +RIGQ K VVVYRL+T T+++KI + K L K Sbjct: 640 FNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEK 744
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: FUN30_YEAST (Uncharacterized ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae GN=FUN30 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.933e-18 Identity = 45/112 (40.18%), Postives = 72/112 (64.29%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE 337 YKFL DG+T+ +DR +++ F E PIF+L+++ GG G+ L A+ VI+ D ++NP D Q+ DRA+R+GQ K+V + L+T ++EEKI++ K L +E K+ Sbjct: 991 YKFLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDKK 1102 The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 169
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bpback to top |