CF834523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ARIP4_HUMAN (Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 7.933e-18 Identity = 47/126 (37.30%), Postives = 76/126 (60.32%), Query Frame = 2 Query: 8 FLLFDGTTKASDRVKIVNDFQEGD--VAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELL 379 + DG+T A +R +++N F + +FLL+++ G LG+ L A+RV+V D +WNP D Q+V R YR GQKK +YRL+ T+E+KIY +QI K G+ + + F+++++ LL Sbjct: 782 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLL 907
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA2_MOUSE (Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.036e-17 Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 + +L DGTTK+ DR ++ F E G IFLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+ +V V RL T +VEEKI +K Sbjct: 1096 FLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1196
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA2_HUMAN (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 1.036e-17 Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 + +L DGTTK+ DR ++ F E G IFLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+ +V V RL T +VEEKI +K Sbjct: 1091 FLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1191
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ARIP4_MOUSE (Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.353e-17 Identity = 47/126 (37.30%), Postives = 76/126 (60.32%), Query Frame = 2 Query: 8 FLLFDGTTKASDRVKIVNDFQEGD--VAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELL 379 + DG+T A +R +++N F + +FLL+++ G LG+ L A+RV+V D +WNP D Q+V R YR GQKK +YRL+ T+E+KIY +QI K G+ + + F+++++ LL Sbjct: 781 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLL 906
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.767e-17 Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 379 Y ++ DG TK DR + F +F+L+S+ GGLG+ LT AD VI D WNP+ D Q DR +RIGQ +DV +YR ++ T+E I +K K L + + YFS+ +R+LL Sbjct: 1287 YLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVIQEGDFTTDYFSKLSVRDLL 1413
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.014e-17 Identity = 49/127 (38.58%), Postives = 73/127 (57.48%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 379 +++L DGTTK R + + F + F+L+S+ GGLG+ LT AD VI D WNP+ D Q DR +RIGQ +DV +YR ++ T+E I RK K L + E YF++ D+R+++ Sbjct: 1372 HRYLRLDGTTKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGEFTTDYFTKLDVRDMI 1498
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 3.014e-17 Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289 Y++ DG+T DR + + D IF+LT++ GGLG+ L AD VI+ D WNP +D Q++DRA+RIGQKK V V+RL+T TV+E+I K Sbjct: 476 YEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEK 572
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ATRX_CAEEL (Transcriptional regulator ATRX homolog OS=Caenorhabditis elegans GN=xnp-1 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.014e-17 Identity = 45/134 (33.58%), Postives = 72/134 (53.73%), Query Frame = 2 Query: 8 FLLFDGTTKASDRVKIVNDFQE--GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFD 403 ++ DG+ ++ R + F + A + L++++ G LG + A+RVI+ D WNPS D QS+ R YR GQ K V +YR + GT+EE+IY++Q+ K + + R++ DL EL FD Sbjct: 1016 YMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVAANRVIIFDACWNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDEAQIQRHYLGNDLTELYQFTPSTFD 1149
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_GIBZE (Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.937e-17 Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLS 382 +K+L DG TK R + + F F+L+++ GGLG+ LT AD VI D WNP+ D Q DR +RIGQ +DV +YRL++ T+E I RK K L + E YF++ +R++LS Sbjct: 1412 HKYLRLDGATKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEGEFTTDYFNKLSVRDVLS 1539
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_YARLI (Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.142e-17 Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 2 Query: 5 KFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSL 385 +++ DG TK R + F P+F+L+++ GGLG+ LT AD VI D WNPS D Q DR +RIGQ +DV +YR ++ T+E I +K K L + E YF++ + ++L L Sbjct: 1511 RYMRLDGATKIEQRQLLTERFNTDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPSMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKQILDNVVIQDGEFTTDYFNKMSVHDMLGL 1638 The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 169
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bpback to top |