CF834523

Overview
NameCF834523
Unique NameCF834523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ARIP4_HUMAN (Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 7.933e-18
Identity = 47/126 (37.30%), Postives = 76/126 (60.32%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQEGD--VAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELL 379
            +   DG+T A +R +++N F +       +FLL+++ G LG+ L  A+RV+V D +WNP  D Q+V R YR GQKK   +YRL+   T+E+KIY +QI K G+     +    +  F+++++  LL
Sbjct:  782 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLL 907          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA2_MOUSE (Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.036e-17
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            + +L  DGTTK+ DR  ++  F E G    IFLL+++ GGLGL L  AD V++ D  WNP  D Q+ DRA+RIGQ+ +V V RL T  +VEEKI     +K
Sbjct: 1096 FLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1196          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA2_HUMAN (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.036e-17
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            + +L  DGTTK+ DR  ++  F E G    IFLL+++ GGLGL L  AD V++ D  WNP  D Q+ DRA+RIGQ+ +V V RL T  +VEEKI     +K
Sbjct: 1091 FLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1191          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ARIP4_MOUSE (Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.353e-17
Identity = 47/126 (37.30%), Postives = 76/126 (60.32%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQEGD--VAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELL 379
            +   DG+T A +R +++N F +       +FLL+++ G LG+ L  A+RV+V D +WNP  D Q+V R YR GQKK   +YRL+   T+E+KIY +QI K G+     +    +  F+++++  LL
Sbjct:  781 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLL 906          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.767e-17
Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 379
            Y ++  DG TK  DR  +   F       +F+L+S+ GGLG+ LT AD VI  D  WNP+ D Q  DR +RIGQ +DV +YR ++  T+E  I +K   K  L     +  +    YFS+  +R+LL
Sbjct: 1287 YLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVIQEGDFTTDYFSKLSVRDLL 1413          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.014e-17
Identity = 49/127 (38.58%), Postives = 73/127 (57.48%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 379
            +++L  DGTTK   R  + + F   +    F+L+S+ GGLG+ LT AD VI  D  WNP+ D Q  DR +RIGQ +DV +YR ++  T+E  I RK   K  L     +  E    YF++ D+R+++
Sbjct: 1372 HRYLRLDGTTKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGEFTTDYFTKLDVRDMI 1498          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.014e-17
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289
            Y++   DG+T   DR   +  +   D    IF+LT++ GGLG+ L  AD VI+ D  WNP +D Q++DRA+RIGQKK V V+RL+T  TV+E+I  K
Sbjct:  476 YEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEK 572          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ATRX_CAEEL (Transcriptional regulator ATRX homolog OS=Caenorhabditis elegans GN=xnp-1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.014e-17
Identity = 45/134 (33.58%), Postives = 72/134 (53.73%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQE--GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFD 403
            ++  DG+ ++  R  +   F +     A + L++++ G LG  +  A+RVI+ D  WNPS D QS+ R YR GQ K V +YR +  GT+EE+IY++Q+ K        +  +  R++   DL EL       FD
Sbjct: 1016 YMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVAANRVIIFDACWNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDEAQIQRHYLGNDLTELYQFTPSTFD 1149          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_GIBZE (Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.937e-17
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLS 382
            +K+L  DG TK   R  + + F        F+L+++ GGLG+ LT AD VI  D  WNP+ D Q  DR +RIGQ +DV +YRL++  T+E  I RK   K  L     +  E    YF++  +R++LS
Sbjct: 1412 HKYLRLDGATKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEGEFTTDYFNKLSVRDVLS 1539          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_YARLI (Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.142e-17
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 2
Query:    5 KFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSL 385
            +++  DG TK   R  +   F      P+F+L+++ GGLG+ LT AD VI  D  WNPS D Q  DR +RIGQ +DV +YR ++  T+E  I +K   K  L     +  E    YF++  + ++L L
Sbjct: 1511 RYMRLDGATKIEQRQLLTERFNTDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPSMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKQILDNVVIQDGEFTTDYFNKMSVHDMLGL 1638          
The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ARIP4_HUMAN7.933e-1837.30Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=... [more]
SMCA2_MOUSE1.036e-1747.52Probable global transcription activator SNF2L2 OS=... [more]
SMCA2_HUMAN1.036e-1747.52Probable global transcription activator SNF2L2 OS=... [more]
ARIP4_MOUSE1.353e-1737.30Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=... [more]
SWR1_YEAST1.767e-1738.58Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 ... [more]
SWR1_EMENI3.014e-1738.58Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 ... [more]
ISW1_CAEEL3.014e-1746.39Chromatin-remodeling complex ATPase chain isw-1 OS... [more]
ATRX_CAEEL3.014e-1733.58Transcriptional regulator ATRX homolog OS=Caenorha... [more]
SWR1_GIBZE3.937e-1739.06Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1[more]
SWR1_YARLI5.142e-1736.72Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bp
TTACAAGTTTCTCCTTTTTGATGGTACCACAAAAGCTAGTGACAGAGTGA
AGATTGTTAATGATTTTCAAGAGGGTGACGTGGCTCCTATATTTCTTTTG
ACATCTCAAGTTGGGGGTCTAGGCCTCACACTTACTAAAGCAGACCGTGT
GATTGTGGTGGATCCTGCTTGGAATCCAAGTACTGATAATCAAAGCGTTG
ATCGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTA
ATGACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAA
AGGCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATT
TTAGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTT
GATGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCA
CAACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAG
GTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGA
GTGCAAGTAGTGCAGGAAGAACAGGAAGTGACAAGGAGAAAAGGAACTGC
ATTTGTTGGTAATTTGTCATCTAGCTACCTGGTTGCACGAAACGTCGATG
GGGCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCT
TCTTCCCCAATAACTGAAGCTAAATTGAAAGAGTCTGATATCAAG
back to top