CF834523

Overview
NameCF834523
Unique NameCF834523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.142e-17
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289
            Y +   DG T   DR + + +F   + A  +F+L+++ GGLG+ L  AD VI+ D  WNP  D Q++DRA+RIGQKK V V+RL+T  TVEEKI  +
Sbjct:  472 YNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVER 568          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HELLS_MOUSE (Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.142e-17
Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK 316
            F   DG+   S+R K +  F       +FL++++ GGLG+ LT AD VI+ D  WNP +D Q+ DR +RIGQ K VVVYRL+T  T+++KI  +   K  L K
Sbjct:  625 FSRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEK 727          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_ASHGO (Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.715e-17
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 379
            Y ++  DG TK  DR  +   F       +F+L+S+ GGLG+ LT AD VI  D  WNP+ D Q  DR +RIGQ +DV +YR  +  T+E  I +K   K  L     +  E    YFS+  +++LL
Sbjct: 1258 YLYMRLDGATKIEDRQILTERFNTDPRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFASEHTIESNILKKANQKRQLDNIVIQKGEFTTDYFSRLSVKDLL 1384          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.715e-17
Identity = 40/97 (41.24%), Postives = 65/97 (67.01%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289
            +++   DG+T   +R++ ++++ + +    +FLLT++ GGLG+ L  AD VI+ D  WNP  D Q++DRA+RIGQKK V VYR +T   +EEK+  +
Sbjct:  531 FEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIER 627          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_CANGA (Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLREL 376
            Y ++  DG TK  DR  +   F       +F+L+S+ GGLG+ LT AD VI  D  WNP+ D Q  DR +RIGQ +DV +YR ++  T+E  I +K   K  L     +  E    YFS+  +++L
Sbjct: 1219 YLYMRLDGATKIEDRQILTERFNSDPKITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDDVIIQKGEFTTDYFSKLSVKDL 1344          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_NEUCR (Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16
Identity = 49/127 (38.58%), Postives = 71/127 (55.91%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 379
            +K+L  DG TK   R  + + F        F+L+++ GGLG+ LT AD VI  D  WNP+ D Q  DR +RIGQ +DV +YRL++  T+E  I RK   K  L     +  E    YF++  +R++L
Sbjct: 1547 HKYLRLDGATKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEGEFTTDYFNRLSVRDVL 1673          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16
Identity = 47/127 (37.01%), Postives = 70/127 (55.12%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 379
            Y ++  DG TK  DR  +   F       +F+L+S+ GGLG+ LT AD VI  D  WNP+ D Q  DR +RIGQ +DV +YR ++  T+E  I +K   K  L     +  +    YF++  +++LL
Sbjct: 1351 YLYMRLDGATKIEDRQILTERFNSDPRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSDHTIESNILKKANQKRHLDNVVIQTGDFTTDYFTKLSVKDLL 1477          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_CRYNE (Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289
            +++L  DG+TK  DR  +   F       +F+ +S+ GG+G+ LT AD V   D  WNPS D Q +DRA+RIGQ ++V +YR ++  TVEE + RK
Sbjct:  979 HRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIASSRSGGVGINLTGADTVFFYDSDWNPSMDRQCMDRAHRIGQTREVHIYRFVSSHTVEENMLRK 1074          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SNF22_SCHPO (SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe GN=snf22 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQE--GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            +K+L  DG+TK+ DR  ++  F +   DV  IF+L+++ GGLGL L  AD VI+ D  WNP  D Q+ DRA+RIGQ K+V + RL+T  ++EE I  +  +K
Sbjct: 1228 WKYLRLDGSTKSDDRCSLLAQFNDPKSDVY-IFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYK 1328          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RDH54_YEAST (DNA repair and recombination protein RDH54 OS=Saccharomyces cerevisiae GN=RDH54 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.954e-16
Identity = 48/129 (37.21%), Postives = 74/129 (57.36%), Query Frame = 2
Query:   20 DGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK-----TATEHKEQIR--YFSQQDLRELLSL 385
            DG+  A  R  IV  F        FLL+++ GG+GL L    R+I+ D  WNPS D Q++ R +R GQKK   +YRL+T G ++EKI ++Q+ K  L +     +   +KE      F+++DL++L S+
Sbjct:  678 DGSIPAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGRSRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLFSV 806          
The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ISWI_DROME5.142e-1746.39Chromatin-remodeling complex ATPase chain Iswi OS=... [more]
HELLS_MOUSE5.142e-1743.69Lymphocyte-specific helicase OS=Mus musculus GN=He... [more]
SWR1_ASHGO6.715e-1738.58Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1[more]
ISW2_YEAST6.715e-1741.24ISWI chromatin-remodeling complex ATPase ISW2 OS=S... [more]
SWR1_CANGA8.771e-1738.10Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=... [more]
SWR1_NEUCR1.145e-1638.58Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 ... [more]
SWR1_KLULA1.145e-1637.01Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3... [more]
SWR1_CRYNE1.496e-1642.71Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 P... [more]
SNF22_SCHPO1.496e-1645.10SWI/SNF chromatin-remodeling complex subunit snf22... [more]
RDH54_YEAST1.954e-1637.21DNA repair and recombination protein RDH54 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bp
TTACAAGTTTCTCCTTTTTGATGGTACCACAAAAGCTAGTGACAGAGTGA
AGATTGTTAATGATTTTCAAGAGGGTGACGTGGCTCCTATATTTCTTTTG
ACATCTCAAGTTGGGGGTCTAGGCCTCACACTTACTAAAGCAGACCGTGT
GATTGTGGTGGATCCTGCTTGGAATCCAAGTACTGATAATCAAAGCGTTG
ATCGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTA
ATGACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAA
AGGCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATT
TTAGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTT
GATGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCA
CAACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAG
GTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGA
GTGCAAGTAGTGCAGGAAGAACAGGAAGTGACAAGGAGAAAAGGAACTGC
ATTTGTTGGTAATTTGTCATCTAGCTACCTGGTTGCACGAAACGTCGATG
GGGCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCT
TCTTCCCCAATAACTGAAGCTAAATTGAAAGAGTCTGATATCAAG
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