CF834523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.142e-17 Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289 Y + DG T DR + + +F + A +F+L+++ GGLG+ L AD VI+ D WNP D Q++DRA+RIGQKK V V+RL+T TVEEKI + Sbjct: 472 YNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVER 568
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HELLS_MOUSE (Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 5.142e-17 Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = 2 Query: 8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK 316 F DG+ S+R K + F +FL++++ GGLG+ LT AD VI+ D WNP +D Q+ DR +RIGQ K VVVYRL+T T+++KI + K L K Sbjct: 625 FSRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEK 727
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_ASHGO (Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.715e-17 Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 379 Y ++ DG TK DR + F +F+L+S+ GGLG+ LT AD VI D WNP+ D Q DR +RIGQ +DV +YR + T+E I +K K L + E YFS+ +++LL Sbjct: 1258 YLYMRLDGATKIEDRQILTERFNTDPRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFASEHTIESNILKKANQKRQLDNIVIQKGEFTTDYFSRLSVKDLL 1384
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.715e-17 Identity = 40/97 (41.24%), Postives = 65/97 (67.01%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289 +++ DG+T +R++ ++++ + + +FLLT++ GGLG+ L AD VI+ D WNP D Q++DRA+RIGQKK V VYR +T +EEK+ + Sbjct: 531 FEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIER 627
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_CANGA (Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17 Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLREL 376 Y ++ DG TK DR + F +F+L+S+ GGLG+ LT AD VI D WNP+ D Q DR +RIGQ +DV +YR ++ T+E I +K K L + E YFS+ +++L Sbjct: 1219 YLYMRLDGATKIEDRQILTERFNSDPKITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDDVIIQKGEFTTDYFSKLSVKDL 1344
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_NEUCR (Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16 Identity = 49/127 (38.58%), Postives = 71/127 (55.91%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 379 +K+L DG TK R + + F F+L+++ GGLG+ LT AD VI D WNP+ D Q DR +RIGQ +DV +YRL++ T+E I RK K L + E YF++ +R++L Sbjct: 1547 HKYLRLDGATKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEGEFTTDYFNRLSVRDVL 1673
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16 Identity = 47/127 (37.01%), Postives = 70/127 (55.12%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 379 Y ++ DG TK DR + F +F+L+S+ GGLG+ LT AD VI D WNP+ D Q DR +RIGQ +DV +YR ++ T+E I +K K L + + YF++ +++LL Sbjct: 1351 YLYMRLDGATKIEDRQILTERFNSDPRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSDHTIESNILKKANQKRHLDNVVIQTGDFTTDYFTKLSVKDLL 1477
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SWR1_CRYNE (Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16 Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289 +++L DG+TK DR + F +F+ +S+ GG+G+ LT AD V D WNPS D Q +DRA+RIGQ ++V +YR ++ TVEE + RK Sbjct: 979 HRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIASSRSGGVGINLTGADTVFFYDSDWNPSMDRQCMDRAHRIGQTREVHIYRFVSSHTVEENMLRK 1074
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SNF22_SCHPO (SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe GN=snf22 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16 Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQE--GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 +K+L DG+TK+ DR ++ F + DV IF+L+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ K+V + RL+T ++EE I + +K Sbjct: 1228 WKYLRLDGSTKSDDRCSLLAQFNDPKSDVY-IFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYK 1328
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RDH54_YEAST (DNA repair and recombination protein RDH54 OS=Saccharomyces cerevisiae GN=RDH54 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 1.954e-16 Identity = 48/129 (37.21%), Postives = 74/129 (57.36%), Query Frame = 2 Query: 20 DGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK-----TATEHKEQIR--YFSQQDLRELLSL 385 DG+ A R IV F FLL+++ GG+GL L R+I+ D WNPS D Q++ R +R GQKK +YRL+T G ++EKI ++Q+ K L + + +KE F+++DL++L S+ Sbjct: 678 DGSIPAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGRSRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLFSV 806 The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 169
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bpback to top |