CF834523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: YF2C_SCHPO (Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe GN=SPAC17A2.12 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.552e-16 Identity = 48/123 (39.02%), Postives = 73/123 (59.35%), Query Frame = 2 Query: 17 FDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385 +DGT A+ R K ++ F + L++ + G +GL LT A+ VI+ +P +NPS ++Q++DR +R+GQ+K V VYR +T T+EE+I Q K L K A + E S+ D ELL L Sbjct: 771 YDGTMSANQRQKSLHSFNNDKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSVQRKKRQLVKEALDSNEN-NPLSRLDKEELLYL 892
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: STH1_YEAST (Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae GN=STH1 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.552e-16 Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 2 Query: 5 KFLLFDGTTKASDRVKIVNDFQEGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 K++ DG+TK +R +++N F D FLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQK +V + RL+T +VEE I + + K Sbjct: 833 KYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQK 932
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: FFT1_SCHPO (Uncharacterized ATP-dependent helicase fft1 OS=Schizosaccharomyces pombe GN=fft1 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.552e-16 Identity = 48/127 (37.80%), Postives = 76/127 (59.84%), Query Frame = 2 Query: 5 KFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385 +FL DG+T R ++++DF + +FLL+++ GG G+ LT A+ VI+ D ++NP D Q+ DRA+R+GQ + V VYRL+T T+EE I R K L + T E+I+ +L + L + Sbjct: 806 EFLRLDGSTPVETRQQLIDDFHTNENYKVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEENIRRLANTKLTLESSLTTDSEKIQKEISGELMKSLQM 932
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: YFC1_SCHPO (Uncharacterized ATP-dependent helicase C25A8.01c OS=Schizosaccharomyces pombe GN=SPAC25A8.01c PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.333e-16 Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 2 Query: 5 KFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQD 364 KFL FDG+T+ R +++ F + +FLL+++ GG G+ L A+ VI+ D ++NP D Q+ DRA+R+GQKK+V VY+ + T+EE I R K L T + + E + D Sbjct: 803 KFLRFDGSTQVDFRQDLIDQFYADESINVFLLSTKAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQRLANAKIALDATLSGNAETVEAEDDDD 922
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RDH54_SCHPO (Meiotic recombination protein rdh54 OS=Schizosaccharomyces pombe GN=rdh54 PE=1 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 3.333e-16 Identity = 45/133 (33.83%), Postives = 80/133 (60.15%), Query Frame = 2 Query: 5 KFLLFDGTTKASDRVKIVNDFQEGDVAP--IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKT--ATEHKEQIRYFSQQDLRELLSLPK 391 +F G+T S+R IV++F + LL+S+ GG GL LT + R+I+ +P+WNP+ D Q++ R YR GQK+ V +Y ++ G ++E+I+ +Q K GL + ++ ++ +F+ +D++ L S K Sbjct: 574 RFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSGQKRPVCIYTFLSSGMLDERIFIRQNTKQGLSSSFIDSDASQKKNFFTGEDIKTLFSYSK 706
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HRP1_SCHPO (Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe GN=hrp1 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.333e-16 Identity = 61/179 (34.08%), Postives = 91/179 (50.84%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY----RKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQG----FDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAG 511 Y + DGT AS R ++ F D +FLL+++ GGLG+ L AD VI+ D WNP D Q++ RA+RIGQK V VYR ++ TVEE I RK I + + K + + D +EL ++ K G F + Q++L + N+D+ L +H + D+ G Sbjct: 745 YNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYAIISLGVTEKSKNSKNDKYDAQELSAILKFGASNMFKATENQKKL-----ENMNLDDIL-SHAEDRDSSNDVG 917
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.353e-16 Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 Y++ DG T +R + ++ F + + IF+L+++ GGLG+ L AD VI+ D WNP D Q++DRA+RIGQKK V V+RL+T TVEE+I + K Sbjct: 531 YEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIK 631
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 4.353e-16 Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289 Y F DG+ K R + ++ F +G FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK V +YRL+T GTVEE+I + Sbjct: 832 YPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIER 928
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HRP3_SCHPO (Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe GN=hrp3 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16 Identity = 57/175 (32.57%), Postives = 92/175 (52.57%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY----RKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAG 511 Y DGT A+ R ++ F + +FLL+++ GGLG+ L AD VI+ D WNP D Q++ RA+RIGQK V+VYRL++ T+EE + RK I + + K++ + EL ++ K G ++ + + +++ + N+DE LE H + DT G Sbjct: 731 YPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILEYAIISLGVTDKQKNSKNDKFSAEELSAILKFGAS-NMFKAENNQKKLEDMNLDEILE-HAEDHDTSNDVG 903
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: TTF2_MOUSE (Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 7.425e-16 Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 2 Query: 8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE 337 + DG+ R+ +V F + L++ GG+GL LT + + ++D WNPS ++Q+ DR YR+GQKKDVV++R + GTVEEKI + Q K L K E Sbjct: 1012 YATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSE 1121 The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 169
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bpback to top |