CF834523

Overview
NameCF834523
Unique NameCF834523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: YF2C_SCHPO (Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe GN=SPAC17A2.12 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.552e-16
Identity = 48/123 (39.02%), Postives = 73/123 (59.35%), Query Frame = 2
Query:   17 FDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385
            +DGT  A+ R K ++ F       + L++ + G +GL LT A+ VI+ +P +NPS ++Q++DR +R+GQ+K V VYR +T  T+EE+I   Q  K  L K A +  E     S+ D  ELL L
Sbjct:  771 YDGTMSANQRQKSLHSFNNDKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSVQRKKRQLVKEALDSNEN-NPLSRLDKEELLYL 892          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: STH1_YEAST (Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae GN=STH1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.552e-16
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:    5 KFLLFDGTTKASDRVKIVNDFQEGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            K++  DG+TK  +R +++N F   D     FLL+++ GGLGL L  AD VI+ D  WNP  D Q+ DRA+RIGQK +V + RL+T  +VEE I  + + K
Sbjct:  833 KYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQK 932          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: FFT1_SCHPO (Uncharacterized ATP-dependent helicase fft1 OS=Schizosaccharomyces pombe GN=fft1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.552e-16
Identity = 48/127 (37.80%), Postives = 76/127 (59.84%), Query Frame = 2
Query:    5 KFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385
            +FL  DG+T    R ++++DF   +   +FLL+++ GG G+ LT A+ VI+ D ++NP  D Q+ DRA+R+GQ + V VYRL+T  T+EE I R    K  L  + T   E+I+     +L + L +
Sbjct:  806 EFLRLDGSTPVETRQQLIDDFHTNENYKVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEENIRRLANTKLTLESSLTTDSEKIQKEISGELMKSLQM 932          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: YFC1_SCHPO (Uncharacterized ATP-dependent helicase C25A8.01c OS=Schizosaccharomyces pombe GN=SPAC25A8.01c PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.333e-16
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 2
Query:    5 KFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQD 364
            KFL FDG+T+   R  +++ F   +   +FLL+++ GG G+ L  A+ VI+ D ++NP  D Q+ DRA+R+GQKK+V VY+ +   T+EE I R    K  L  T + + E +      D
Sbjct:  803 KFLRFDGSTQVDFRQDLIDQFYADESINVFLLSTKAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQRLANAKIALDATLSGNAETVEAEDDDD 922          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RDH54_SCHPO (Meiotic recombination protein rdh54 OS=Schizosaccharomyces pombe GN=rdh54 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.333e-16
Identity = 45/133 (33.83%), Postives = 80/133 (60.15%), Query Frame = 2
Query:    5 KFLLFDGTTKASDRVKIVNDFQEGDVAP--IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKT--ATEHKEQIRYFSQQDLRELLSLPK 391
            +F    G+T  S+R  IV++F         + LL+S+ GG GL LT + R+I+ +P+WNP+ D Q++ R YR GQK+ V +Y  ++ G ++E+I+ +Q  K GL  +   ++  ++  +F+ +D++ L S  K
Sbjct:  574 RFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSGQKRPVCIYTFLSSGMLDERIFIRQNTKQGLSSSFIDSDASQKKNFFTGEDIKTLFSYSK 706          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HRP1_SCHPO (Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe GN=hrp1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.333e-16
Identity = 61/179 (34.08%), Postives = 91/179 (50.84%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY----RKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQG----FDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAG 511
            Y +   DGT  AS R   ++ F   D    +FLL+++ GGLG+ L  AD VI+ D  WNP  D Q++ RA+RIGQK  V VYR ++  TVEE I     RK I +  +       K +     + D +EL ++ K G    F  +  Q++L     +  N+D+ L +H +  D+    G
Sbjct:  745 YNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYAIISLGVTEKSKNSKNDKYDAQELSAILKFGASNMFKATENQKKL-----ENMNLDDIL-SHAEDRDSSNDVG 917          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.353e-16
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            Y++   DG T   +R + ++ F   + +  IF+L+++ GGLG+ L  AD VI+ D  WNP  D Q++DRA+RIGQKK V V+RL+T  TVEE+I  +   K
Sbjct:  531 YEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIK 631          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.353e-16
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 289
            Y F   DG+ K   R + ++ F  +G     FLL+++ GGLG+ L  AD V++ D  WNP  D Q+  RA+RIGQKK V +YRL+T GTVEE+I  +
Sbjct:  832 YPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIER 928          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: HRP3_SCHPO (Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe GN=hrp3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 57/175 (32.57%), Postives = 92/175 (52.57%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY----RKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAG 511
            Y     DGT  A+ R   ++ F   +    +FLL+++ GGLG+ L  AD VI+ D  WNP  D Q++ RA+RIGQK  V+VYRL++  T+EE +     RK I +  +       K++     +    EL ++ K G   ++ + + +++  +  N+DE LE H +  DT    G
Sbjct:  731 YPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILEYAIISLGVTDKQKNSKNDKFSAEELSAILKFGAS-NMFKAENNQKKLEDMNLDEILE-HAEDHDTSNDVG 903          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: TTF2_MOUSE (Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.425e-16
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE 337
            +   DG+     R+ +V  F       + L++   GG+GL LT  + + ++D  WNPS ++Q+ DR YR+GQKKDVV++R +  GTVEEKI + Q  K  L K      E
Sbjct: 1012 YATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSE 1121          
The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
YF2C_SCHPO2.552e-1639.02Uncharacterized ATP-dependent helicase C17A2.12 OS... [more]
STH1_YEAST2.552e-1645.00Nuclear protein STH1/NPS1 OS=Saccharomyces cerevis... [more]
FFT1_SCHPO2.552e-1637.80Uncharacterized ATP-dependent helicase fft1 OS=Sch... [more]
YFC1_SCHPO3.333e-1637.50Uncharacterized ATP-dependent helicase C25A8.01c O... [more]
RDH54_SCHPO3.333e-1633.83Meiotic recombination protein rdh54 OS=Schizosacch... [more]
HRP1_SCHPO3.333e-1634.08Chromodomain helicase hrp1 OS=Schizosaccharomyces ... [more]
SMCA1_MOUSE4.353e-1643.56Probable global transcription activator SNF2L1 OS=... [more]
CHD2_HUMAN4.353e-1645.36Chromodomain-helicase-DNA-binding protein 2 OS=Hom... [more]
HRP3_SCHPO5.685e-1632.57Chromodomain helicase hrp3 OS=Schizosaccharomyces ... [more]
TTF2_MOUSE7.425e-1638.18Transcription termination factor 2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bp
TTACAAGTTTCTCCTTTTTGATGGTACCACAAAAGCTAGTGACAGAGTGA
AGATTGTTAATGATTTTCAAGAGGGTGACGTGGCTCCTATATTTCTTTTG
ACATCTCAAGTTGGGGGTCTAGGCCTCACACTTACTAAAGCAGACCGTGT
GATTGTGGTGGATCCTGCTTGGAATCCAAGTACTGATAATCAAAGCGTTG
ATCGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTA
ATGACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAA
AGGCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATT
TTAGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTT
GATGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCA
CAACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAG
GTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGA
GTGCAAGTAGTGCAGGAAGAACAGGAAGTGACAAGGAGAAAAGGAACTGC
ATTTGTTGGTAATTTGTCATCTAGCTACCTGGTTGCACGAAACGTCGATG
GGGCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCT
TCTTCCCCAATAACTGAAGCTAAATTGAAAGAGTCTGATATCAAG
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