CF834539

Overview
NameCF834539
Unique NameCF834539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1841 contig Csv1_Contig1841:132..555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: PR1C_HORVU (Pathogenesis-related protein 1C OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.142e-13
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   52 AGHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPM 339
            AG P+   GGF L +    S   PA    GRIWA TGC++  G  SC TGDCG +L C+ L G  PATLA+ T+  G      Y +S++D FN+ M
Sbjct:   36 AGIPV--GGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNGGSGSCQTGDCGGQLSCS-LSGRPPATLAEFTIGGGSTQ-DFYDISVIDGFNLAM 127          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.142e-13
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   52 AGHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPM 339
            AG P+   GGF L +    S   PA    GRIWA TGC++  G  SC TGDCG +L C+ L G  PATLA+ T+  G      Y +S++D FN+ M
Sbjct:   36 AGIPV--GGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNGGSGSCQTGDCGGQLSCS-LSGQPPATLAEFTIGGGSTQ-DFYDISVIDGFNLAM 127          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   52 AGHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPM 339
            AG P+   GGF L +    S   PA    GRIWA TGC++  G  SC TGDCG +L C+ L G  PATLA+ T+  G      Y +S++D FN+ M
Sbjct:   36 AGIPV--GGGFALGSGQTSSINVPAGTQAGRIWARTGCSFNGGSGSCQTGDCGGQLSCS-LSGRPPATLAEYTIGGGSTQ-DFYDISVIDGFNLAM 127          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: OS35_SOLCO (Osmotin-like protein OSML15 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13
Identity = 50/137 (36.50%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   19 PFTSGRPSRPNAGHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPMTVTP-HEGKGVCPVVGCRADLLSTCPQNL 423
            P+T    + P  G   LERG  +        F AP      RIW  T C +   G+  C TGDCG  LEC G  G  P TLA+  L+   N L  + +S++D FN+PM+  P + G G C  + C A++   CP +L
Sbjct:   32 PYTVWAAATPIGGGRRLERGQSWW-------FWAPPGTKMARIWGRTNCNFDGAGRGWCQTGDCGGVLECKG-WGKPPNTLAEYALNQFSN-LDFWDISVIDGFNIPMSFGPTNPGPGKCHPIQCVANINGECPGSL 159          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: OLPA_TOBAC (Osmotin-like protein OS=Nicotiana tabacum GN=OLPA PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-13
Identity = 50/137 (36.50%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   19 PFTSGRPSRPNAGHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPMTVTPHE-GKGVCPVVGCRADLLSTCPQNL 423
            P+T    + P  G   LERG  +        F AP      RIW  T C +   G+  C TGDCG  LEC G  G  P TLA+  L+   N L  + +S++D FN+PM+  P + G G C  + C A++   CP +L
Sbjct:   32 PYTVWAAATPVGGGRRLERGQSWW-------FWAPPGTKMARIWGRTNCNFDGAGRGWCQTGDCGGVLECKG-WGKPPNTLAEYALNQFSN-LDFWDISVIDGFNIPMSFGPTKPGPGKCHGIQCTANINGECPGSL 159          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.770e-12
Identity = 38/95 (40.00%), Postives = 50/95 (52.63%), Query Frame = 1
Query:  142 RIWAITGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCPQNL 423
            R+W  TGC +   G+  C TGDC   L+C   G   P TLA+  L+   N+L  + +SLVD FNV M  +P  G G    + C AD+   CP  L
Sbjct:   67 RVWPRTGCNFDGAGRGKCQTGDCNGLLQCQAFG-QPPNTLAEYALNQ-FNNLDFFDISLVDGFNVAMEFSPTSG-GCTRGIKCTADINGQCPNEL 158          

HSP 2 Score: 23.483 bits (49), Expect = 6.770e-12
Identity = 7/12 (58.33%), Postives = 9/12 (75.00%), Query Frame = 3
Query:    3 LVNNCPLHVWPA 38
            ++NNCP  VW A
Sbjct:   29 IINNCPFTVWAA 40          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.867e-12
Identity = 43/113 (38.05%), Postives = 60/113 (53.10%), Query Frame = 1
Query:   52 AGHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPMTVTPHEGKGV-CPVVGC 387
            AG P+   GGF L++    +   PA    GRIW  TGC++ +G+ SC TGDC   L C   G   PATLA+ T+  G  D   Y +S++D +N+ M  +   G  + C   GC
Sbjct:   37 AGIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDCAGALSCTLSG--QPATLAEYTI-GGSQDF--YDISVIDGYNLAMDFSCSTGVALKCRDSGC 142          

HSP 2 Score: 21.9422 bits (45), Expect = 6.867e-12
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 3
Query:    3 LVNNCPLHVWPA 38
            + NNC   VWPA
Sbjct:   26 ITNNCGFTVWPA 37          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.918e-12
Identity = 40/96 (41.67%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   52 AGHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPM 339
            AG P+   GGF L++    +   PA    GRIW  TGC++ +G+ SC TGDC   L C   G   PATLA+ T+  G  D   Y +S++D FN+ M
Sbjct:   37 AGIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDCAGALSCTLSG--QPATLAEYTI-GGSQDF--YDISVIDGFNLAM 125          

HSP 2 Score: 21.9422 bits (45), Expect = 8.918e-12
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 3
Query:    3 LVNNCPLHVWPA 38
            + NNC   VWPA
Sbjct:   26 ITNNCGFTVWPA 37          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: OSL3_ARATH (Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.176e-11
Identity = 39/95 (41.05%), Postives = 51/95 (53.68%), Query Frame = 1
Query:  142 RIWAITGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCPQNL 423
            RIW  T C + + G+  C TGDC   L+C G G   P TLA+  L+   N+L  Y +SLVD FN+PM  +P      C  + C AD+   CP  L
Sbjct:   65 RIWGRTNCNFDSSGRGRCQTGDCSGGLQCTGWG-QPPNTLAEYALNQ-FNNLDFYDISLVDGFNIPMEFSPTSSN--CHRILCTADINGQCPNVL 155          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.535e-11
Identity = 39/95 (41.05%), Postives = 50/95 (52.63%), Query Frame = 1
Query:  142 RIWAITGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCPQNL 423
            RIW  T C +   G+ +C TGDC   LEC G G A P TLA+  L+  + D     +SLVD FN+PM  +P  G   C  + C A +   CP  L
Sbjct:   68 RIWGRTNCNFDGSGRGNCETGDCNGMLECQGYGKA-PNTLAEFALNQPNQDFVD--ISLVDGFNIPMEFSPTNGG--CRNLRCTAPINEQCPAQL 157          
The following BLAST results are available for this feature:
BLAST of CF834539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PR1C_HORVU2.142e-1344.79Pathogenesis-related protein 1C OS=Hordeum vulgare... [more]
PR1A_HORVU2.142e-1344.79Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
TLP_WHEAT2.798e-1344.79Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
OS35_SOLCO2.798e-1336.50Osmotin-like protein OSML15 OS=Solanum commersonii... [more]
OLPA_TOBAC2.798e-1336.50Osmotin-like protein OS=Nicotiana tabacum GN=OLPA ... [more]
TLP_ACTDE6.770e-1240.00Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
RST3_AVESA6.867e-1238.05Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST1_AVESA8.918e-1241.67Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
OSL3_ARATH1.176e-1141.05Osmotin-like protein OSM34 OS=Arabidopsis thaliana... [more]
PRR1_TOBAC1.535e-1141.05Pathogenesis-related protein R major form OS=Nicot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05L08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834539 ID=CF834539; Name=CF834539; organism=Citrus sinensis; type=EST; length=425bp
CCCTAGTCAACAACTGCCCCCTTCACGTCTGGCCGGCCATCCAGACCCAA
CGCCGGCCACCCAATCCTCGAACGTGGCGGTTTCTATCTCCATACCCTCA
CCCACCGCTCCTTCCCCGCTCCGGCCCAACACTGGACGGGCCGGATCTGG
GCCATAACCGGCTGCACCTACGCCCACGGCAAATTCTCCTGCGTCACGGG
CGACTGCGGCCACCGCTTGGAATGCAACGGACTCGGCGGGGCGACTCCAG
CCACCCTGGCCCAGATCACCCTCCACCACGGCCACAACGACCTCTCCTCC
TACCGCGTCTCTCTAGTCGACAGCTTCAACGTCCCCATGACTGTCACCCC
GCACGAGGGCAAGGGCGTCTGTCCGGTAGTGGGTTGTCGCGCTGACCTGC
TATCCACGTGTCCTCAGAACCTGCA
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